View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4698_low_12 (Length: 245)
Name: NF4698_low_12
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_12 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0044 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 88139 - 88327
Alignment:
| Q |
34 |
acattagcgtgaaatcacacagagaacgaaaacattgttactgcaaagttacattgaacccgacgcactttctcgctaaacgcttcttccatcactttac |
133 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
88139 |
acattagcgtgaaatcaca--gagaacgaaaacattgttactgcaaagttacattgatcccgacacactttctcgctaaacgcttcttccgtcactttac |
88236 |
T |
|
| Q |
134 |
acacgtcaaatggccgacgaccaaaccaacatggcttcttctctgccactcacggctgccagtaagaggcagcaattgaacacctccaccg |
224 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
88237 |
gtacgtcaaatggccgacgaccgaaccgacatggcttcttctctgccactcacggctgccactaagaggcagcaattgaacacctccaccg |
88327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University