View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_14 (Length: 240)
Name: NF4698_low_14
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39075676 - 39075463
Alignment:
| Q |
1 |
ttagtttccttttttcatgtctttcaagttccaagttccttttgattcactatgcagttctgtgtatgcttcaatttcactagacagtttatgcagtacc |
100 |
Q |
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| T |
39075676 |
ttagtttccttttttcatgtctt-------ccaagttccttttgattcactatgcagttctgtgtatgcttcaatttcactagacagtttatgcagtacc |
39075584 |
T |
|
| Q |
101 |
tcac--agataaactggttatagtctctaactcaattttcttnnnnnnnnnnnnnngacgtgtttgttgagtcgatgtttgtgctcattgtgatataatt |
198 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39075583 |
tcacaaagataaactggttatagtctctaactcaattttctt---aaaaaaaaaaagacgtgtttgttcagtcgatgtttgtgctcattgtgatataatt |
39075487 |
T |
|
| Q |
199 |
ttgtaagcatattctttctccaac |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39075486 |
ttgtaagcatattctttctccaac |
39075463 |
T |
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