View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_17 (Length: 218)
Name: NF4698_low_17
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 28597831 - 28597684
Alignment:
| Q |
18 |
gagatgttcccttgtgtgattgcaagaagctccacaactgaagtgatatctagtggaataaatggaaccagaaatggtgctctacaactggtat----at |
113 |
Q |
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| T |
28597831 |
gagatgttcccttgtgtgattgcaagaagctccacaactgaagtgatatctagtggaataaatggaaccagaaatggtgctctacaactggtatataaat |
28597732 |
T |
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| Q |
114 |
tatatagtacataaacataaattgttaccttcaattaatactataatg |
161 |
Q |
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| T |
28597731 |
tatatagtacataaacataaattgttaccttcaattaatactataatg |
28597684 |
T |
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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 12325991 - 12325903
Alignment:
| Q |
18 |
gagatgttcccttgtgtgattgcaagaagctccacaactgaagtgatatctagtggaataaatggaaccagaaatggtgctctacaact |
106 |
Q |
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| T |
12325991 |
gagatgtttccttgtatcattgcaagaacctccacaaatgaagtgatatctaatggaataaatggaacaagaaatggtgcacttcaact |
12325903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 52013264 - 52013298
Alignment:
| Q |
169 |
attccctttgaaccttcaactcttcacccataaat |
203 |
Q |
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| T |
52013264 |
attcactttgaaccttcaactcttcacccataaat |
52013298 |
T |
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