View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698_low_19 (Length: 203)

Name: NF4698_low_19
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698_low_19
NF4698_low_19
[»] chr5 (5 HSPs)
chr5 (15-184)||(6730813-6730982)
chr5 (112-184)||(6727843-6727915)
chr5 (112-184)||(6785676-6785751)
chr5 (16-108)||(6760482-6760574)
chr5 (108-184)||(6760633-6760712)
[»] chr1 (1 HSPs)
chr1 (47-83)||(34369550-34369586)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 6730813 - 6730982
Alignment:
Q  15 taatactcatatacgaaacattgatacatatagttaaatttaatcaattcaattttctcagattattattagtacctacgtatccgtgttagtctacata 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  6730813 taatactcatatacgagacattgatacatatagttaaatttaatcacttcaattttctcagaatattattagtacctgcgtatccgtgttagtctacata 6730912  T
Q  115 atggaaaaatagagtaatttgcattagaagtagatgaaggagaaggtgctcacttgccgaaaagtgtaag 184  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  6730913 atggaaaaatagagtaatttgcattagaagtagaggaaggagaaggtgctcacttgccgaaaaatgtaag 6730982  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 6727843 - 6727915
Alignment:
Q  112 ataatggaaaaatagagtaatttgcattagaagtagatgaaggagaaggtgctcacttgccgaaaagtgtaag 184  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6727843 ataatggaaaaatagagtaatttgcattagaagtagaggaaggagaaggtgctcacttgccgaaaagtgtaag 6727915  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 6785676 - 6785751
Alignment:
Q  112 ataatggaaaaatagagtaatttgcattagaag---tagatgaaggagaaggtgctcacttgccgaaaagtgtaag 184  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||| ||||||    
T  6785676 ataatggaaaaatagagtaatttgcattagaagaagtagaggaaggagaaggtgctcacttgccgaaaaatgtaag 6785751  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 6760482 - 6760574
Alignment:
Q  16 aatactcatatacgaaacattgatacatatagttaaatttaatcaattcaattttctcagattattattagtacctacgtatccgtgttagtc 108  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||| || |||||||||| |||||||||||| | ||||||||||||| ||||    
T  6760482 aatactcatatacgagatattgatacctatagttacatttaatcacttaaattttctcaaattattattagtgcatacgtatccgtgtcagtc 6760574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 6760633 - 6760712
Alignment:
Q  108 ctacataatggaaaaatagagtaatttgcattagaag---tagatgaaggagaaggtgctcacttgccgaaaagtgtaag 184  Q
    ||||||||| ||||||||||| ||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  6760633 ctacataatagaaaaatagagaaatatgcattagaagaagtagaggaaggagaaggtgctcacttgccgaaaagtgtaag 6760712  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 34369586 - 34369550
Alignment:
Q  47 gttaaatttaatcaattcaattttctcagattattat 83  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  34369586 gttatatttaatcaattcaattttctcaaattattat 34369550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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