View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_2 (Length: 516)
Name: NF4698_low_2
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 23766793 - 23766521
Alignment:
| Q |
20 |
gtggtaagaatcataagaaggtcaaacttttttaacaaattgatcatgatcatgtatgtagtgaccacaaaataatatgcatgtgggagagttgttgagt |
119 |
Q |
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| T |
23766793 |
gtggtaagaatcataagaaggtcaaacttttttaacaaattgatcatgatcatgtatgtagtgaccacaaaataatatgcatgtgggagagttgttgagt |
23766694 |
T |
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| Q |
120 |
tgatcgacccatgacatatctttttatttattgatcattaattactagtatatgttacgtagtacctctagtgttcatttgttagttgtagaaatttcct |
219 |
Q |
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| T |
23766693 |
tgatcgacccatgacatatctttttatttattgatcattaattactagtatatgttacgtagtacctctagtgttcatgtgttagttgtagaaatttcct |
23766594 |
T |
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| Q |
220 |
ttgattttggatgattggatttagatcctttaattaacgcctatataaagtatatcttatataaatatatgtc |
292 |
Q |
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| T |
23766593 |
ttcattttggatgattggatttagatcctttaattaacgcctatataaagtatatcttatataaatatatgtc |
23766521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 464
Target Start/End: Complemental strand, 23766428 - 23766349
Alignment:
| Q |
385 |
gcacaaaaatatatatcttgatagatttcggacctcgatcattttgtaacnnnnnnncgaaaacaactcgatcattattt |
464 |
Q |
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| T |
23766428 |
gcacaaaaatatatatcttgatagatttcgaacctcgatcattttgtaacaaaaaaacgaaaacaactcgatcattattt |
23766349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 23766334 - 23766281
Alignment:
| Q |
449 |
aactcgatcattatttttgttaaccctcgtatataagttcttataatttggagt |
502 |
Q |
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| T |
23766334 |
aactcgatcattatttttgttaaccctcgtatataagttcttataatttggagt |
23766281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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