View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698_low_4 (Length: 361)

Name: NF4698_low_4
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698_low_4
NF4698_low_4
[»] chr5 (7 HSPs)
chr5 (18-259)||(38157313-38157554)
chr5 (59-259)||(29425380-29425582)
chr5 (99-259)||(27918776-27918936)
chr5 (59-259)||(29568183-29568385)
chr5 (59-259)||(1758232-1758434)
chr5 (59-259)||(29168339-29168541)
chr5 (260-352)||(38157905-38157997)
[»] chr3 (1 HSPs)
chr3 (59-259)||(25518568-25518770)
[»] chr4 (4 HSPs)
chr4 (63-259)||(18986188-18986386)
chr4 (59-259)||(27462084-27462286)
chr4 (59-259)||(27521149-27521351)
chr4 (59-259)||(27482223-27482425)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 38157313 - 38157554
Alignment:
Q  18 ataagggtcgtcgactggttctgtcgatcatcggaactggcaatgctcttcgccgctgtgtcaatgacccatgcctggccggatcaatccatgccggtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157313 ataagggtcgtcgactggttctgtcgatcatcggaactggcaatgctcttcgccgctgtgtcaatgacccatgcctggccggatcaatccatgccggtta 38157412  T
Q  118 aagggtcgtcaactggtttgccgcctctgcctctaatcagtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttattt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157413 aagggtcgtcaactggtttgccgcctctgcctctaatcaggagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttattt 38157512  T
Q  218 gaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38157513 gaactctgctgaaaaaattacatctgaatctgattcaatggt 38157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 29425380 - 29425582
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || |||| |||||||||||||||| |||||| ||||||||| ||||| |||||||||||  ||||    
T  29425380 aatgctcttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatca 29425479  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  29425480 gtagatgtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcatt 29425579  T
Q  257 ggt 259  Q
    |||    
T  29425580 ggt 29425582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 99 - 259
Target Start/End: Original strand, 27918776 - 27918936
Alignment:
Q  99 gatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcagtagatgtatatctgaagttattgatccttctgaggttaaag 198  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27918776 gatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatctgaagttattgatccttctgaggttaaag 27918875  T
Q  199 aaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    || |||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  27918876 aagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggt 27918936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 29568385 - 29568183
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || ||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||||  ||||    
T  29568385 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29568286  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||  |||||||||||||| |    
T  29568285 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcatt 29568186  T
Q  257 ggt 259  Q
    |||    
T  29568185 ggt 29568183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 1758232 - 1758434
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || ||| ||||||||||| ||||| ||||||   ||||||| ||||| ||||||||||| |||||    
T  1758232 aatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatca 1758331  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||  ||||||||||||||||    
T  1758332 ggagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaat 1758431  T
Q  257 ggt 259  Q
    |||    
T  1758432 ggt 1758434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 29168339 - 29168541
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| || ||||||||  ||| ||||||  || ||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||||  ||||    
T  29168339 aatgctcttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29168438  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||  ||||||||||||| |||||| ||  ||  ||||||||||||||||    
T  29168439 gtagatgtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaat 29168538  T
Q  257 ggt 259  Q
    |||    
T  29168539 ggt 29168541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 38157905 - 38157997
Alignment:
Q  260 tatatggtttctaagtgtttttgtgtcaaagacaactatataggtactgatgaactggtcaattcctagttctatgtggtttcttgatgatgt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  38157905 tatatggtttctaagtgtttttgtgtcaaagacaactatataggtactcatgaactggtcaattcctagttctatgtggtttctttatgatgt 38157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 25518568 - 25518770
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    |||||||||||| ||||||||  ||| ||||||  || |||||||||| | |||||||||||||||||||| |||| |||||||||||||||||  ||||    
T  25518568 aatgctcttcgctgctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatca 25518667  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | ||||||||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||  ||  ||||||||||||||||    
T  25518668 ggagatgtatatctgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaat 25518767  T
Q  257 ggt 259  Q
    |||    
T  25518768 ggt 25518770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 18986188 - 18986386
Alignment:
Q  63 ctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcagtag 160  Q
    ||||| |||||||||||  ||| ||||||  || ||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||| |||||| ||    
T  18986188 ctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggag 18986287  T
Q  161 atgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||  | ||||||||||||||||||||||||  ||   ||||||||||||||||||    
T  18986288 atgtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggt 18986386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 27462084 - 27462286
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  ||  |||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||  ||||    
T  27462084 aatgctcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatca 27462183  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | ||||||||||||||||||||||||||| |||||||||||||| ||||  || |||||||||||| |||||||||||  ||  ||||||||||||||||    
T  27462184 gcagatgtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaat 27462283  T
Q  257 ggt 259  Q
    |||    
T  27462284 ggt 27462286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 27521351 - 27521149
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| || |||  || ||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |||||  ||||    
T  27521351 aatgctcttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatca 27521252  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||||||||||| ||||||||||||| ||||  || ||||||||||||||||| ||||||  ||  ||||||||||||||||    
T  27521251 gcagatgtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaat 27521152  T
Q  257 ggt 259  Q
    |||    
T  27521151 ggt 27521149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 27482223 - 27482425
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  ||  ||||||||||||||||| || |||||| ||||||||| ||||| |||||||||||  ||||    
T  27482223 aatgctcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatca 27482322  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||| |||||| |||||||||||||| ||||  || |||||||||||| |||||||||||  ||  ||||||||||||||||    
T  27482323 gcagatgtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaat 27482422  T
Q  257 ggt 259  Q
    |||    
T  27482423 ggt 27482425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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