View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_5 (Length: 360)
Name: NF4698_low_5
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 39076098 - 39075755
Alignment:
| Q |
17 |
atgaagacatgggaagattaagatggacacattttgatgatacacaaaatttatctttgtggtattatttatgttctctccttattgtaaccatttacat |
116 |
Q |
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| T |
39076098 |
atgaagacatgggaagattaagatggacacattttgatgatacaaaaaatttatctttgtggtattatttatgttctctccttattgtaaccatttacat |
39075999 |
T |
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| Q |
117 |
tggtgnnnnnnnnnnnnnnnnnaagcaattggaagtgggttcactacttccttcgaaccaatgctgctagatatatttaattattatcatgtattatttc |
216 |
Q |
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| T |
39075998 |
tggtgttttttatgtgttttttaagcaattggaagtgggttcactacttccttcgaaccaatgctgctagatatatttaattattatcatgtattatttc |
39075899 |
T |
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| Q |
217 |
gtgatatactttgctcaattaatacatggctttgtgctggattttggtttgattcttattgtatattttcatggtagaataatattagtttataggtcca |
316 |
Q |
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| T |
39075898 |
gtgatatactttactcaattaatacatggctttgtgctggattttgttttgattcttattgtatatttgcagggtagaaaaagcatagtttataggtcca |
39075799 |
T |
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| Q |
317 |
atataaagtaacaacagagatttaattcatgttcttgctaaacc |
360 |
Q |
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| T |
39075798 |
atataaagtaacaatagatatttcattcatattcttgctaaacc |
39075755 |
T |
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