View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_9 (Length: 273)
Name: NF4698_low_9
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 38898983 - 38898730
Alignment:
| Q |
4 |
ggtagataattctgacaggtactacttgctagaatatttatgtgagtactctttatatagagggaagctaatcgtgaatctaaaatattcaaattataaa |
103 |
Q |
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| T |
38898983 |
ggtagataattatgacaggtactacttgctagaatatttatgtgagtactctttatatagagggaagctaatcgtgaatctaaaatattcaaattataaa |
38898884 |
T |
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| Q |
104 |
atataggttgacaaaattgcttccataagcttaaatgaaagaaatgaattttagtagtactagtactagtaccaggaaagaggttaagatcttttacatg |
203 |
Q |
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| T |
38898883 |
atataggttgacaaaattgcttccataagcttaaatgaaagaaataaattttagtagtactagtactagtaccaggaaagaggttaagatcttttacatg |
38898784 |
T |
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| Q |
204 |
agcattgcaccaaatagttggaaactaatattaagagatgaaccatgggaaaat |
257 |
Q |
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| T |
38898783 |
agcattgcaccaaatagttggaaactaatattaagagatgaaccatgggaaaat |
38898730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 38645543 - 38645768
Alignment:
| Q |
18 |
acaggtactacttgctagaatatttatgtgagtactctttatatagagggaagctaatcgtgaatctaaaatattcaaattataaaatataggttgacaa |
117 |
Q |
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|||||||||||||||||| ||||| | ||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
38645543 |
acaggtactacttgctaggatattcacgtgagtactctctatatagagagaagctaatcgtgaatctgaattattcaaatcataaaatataggttgacaa |
38645642 |
T |
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| Q |
118 |
aattgcttccataagcttaaatgaaagaaatgaattttagtagtactagtactagtaccaggaaagaggttaagatct-tttacatgagcattgcaccaa |
216 |
Q |
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| T |
38645643 |
agttgcttccacaagcttaaatgaaagaaattaattttagtagtacttgtactagtactaggaaagaggttaagatctctttacatgagcattgcaccaa |
38645742 |
T |
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| Q |
217 |
atagttggaaactaatattaagagat |
242 |
Q |
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| T |
38645743 |
atagttggaaactaatattaagagat |
38645768 |
T |
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