View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4699-Insertion-1 (Length: 1054)
Name: NF4699-Insertion-1
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-1 |
 | |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 906; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 8 - 1054
Target Start/End: Original strand, 2483216 - 2484249
Alignment:
| Q |
8 |
aatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483216 |
aatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
2483315 |
T |
|
| Q |
108 |
atggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttatttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2483316 |
atggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttg |
2483415 |
T |
|
| Q |
208 |
taattattatcccccaggtaacattcctggccaattaccgtaccaataaggagtggttcatatcaagaaaatgatgaaataagtctttaaaataatggtt |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483416 |
taattattatcccccaggtaatattcctggccaattaccgtaccaataaggagtggttcatatcaagaaaatgatgaaataagtctttaaaataatggtt |
2483515 |
T |
|
| Q |
308 |
taaggacaaacttttttgcaataaataactcctcaaaactgtcttctcttcacttttatttagataataaagtcttggacttaactattgatattctatg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483516 |
taaggacaaacttttttgcaataaataactcctcaaatctgtcttctcttcacttttatttagataataaagtcttggacttaactattgatattctatg |
2483615 |
T |
|
| Q |
408 |
aaatcctaacataggttgttcttattctatttttctttattttatatctgtacgtatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
507 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2483616 |
aaaccct----------gttcttattctatttttctttattttatatctgta----tttgtattgttaacatggtatcaagagcatggttcgatccgctt |
2483701 |
T |
|
| Q |
508 |
gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtgatttggttttctta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483702 |
gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttttggtttgtcttttgaatattcgttatattgatagtgatttggttttctta |
2483801 |
T |
|
| Q |
608 |
atttgttattttggttttcttagtttgttaaaaatattcagaggcattacaaattgattattgagtttcttcatgtgcagcaagtggcatatcttgtgtt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2483802 |
atttgttattttggttttcttagtttgttaaaaatcttcagaggcattacaacttgattattgagtttcttcatgtgcagcaagtggcatatcttg-aat |
2483900 |
T |
|
| Q |
708 |
tgcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttg |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483901 |
tgcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttg |
2484000 |
T |
|
| Q |
808 |
gaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattgcgatccactcagaatggtttgtttgg |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
2484001 |
gaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtttggtaataagaaaaaatattacgatccactcagaaaggcttgtttgg |
2484100 |
T |
|
| Q |
908 |
tgtggttgtgatgcaatttggtgataaattgtaatatttagttcgaatgcaaaatgaattgata-tgatattattgatggggctgtcaaggaagattt-g |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
2484101 |
tgtggttgtgatgcaatttggtgataaattgt-atatttagttcgaatgcaaaatgaattgatattgatattattgatggggctgtcaaggaagatttgg |
2484199 |
T |
|
| Q |
1006 |
taaatggtggtttgattaagg-tggttattctggttgtactttgaattcg |
1054 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2484200 |
taaatggtggtttgattaaggttggttattctggttgtactttgaattcg |
2484249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 2478712 - 2479005
Alignment:
| Q |
8 |
aatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
107 |
Q |
| |
|
||||||||||||||||| || |||| ||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2478712 |
aatattgcggtgagcactggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
2478811 |
T |
|
| Q |
108 |
atggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttatttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2478812 |
atggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttg |
2478911 |
T |
|
| Q |
208 |
taattattatcccccaggtaacattcctggccaattaccgtaccaataaggagtggttcatatcaagaaaatg-atgaaataagtctttaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
2478912 |
taattattatcccccaggtaacattcctggccaattaccgtaccaataaggtctggttcagatcaagaaaatgtatgaaataagtctataaaat |
2479005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 461 - 623
Target Start/End: Original strand, 2479191 - 2479359
Alignment:
| Q |
461 |
gtatttgtattgttaacatggtatgaagagcatggttcgatccgctt--gaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttta |
558 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2479191 |
gtatatgtgttgttaacattgtatgaagagcatggtttgatcctcttttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgttttt |
2479290 |
T |
|
| Q |
559 |
ggtttgtcttttgaatattcgt----tatattgatagtgatttggttttcttaatttgttattttggtt |
623 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||| |||||| |
|
|
| T |
2479291 |
ggtttgtcttttgaatattcgttatatatattgatagtgatttagttctcttgatttgttatgttggtt |
2479359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 2486394 - 2486635
Alignment:
| Q |
8 |
aatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
107 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||| ||||| ||||| || ||||| |||| |||| ||| |
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|
| T |
2486394 |
aatattgcggtgagcaccggctacataagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattg |
2486493 |
T |
|
| Q |
108 |
atggt---gaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttat |
204 |
Q |
| |
|
||||| ||||| || |||| ||| |||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2486494 |
atggtcatgaatgccaccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttac |
2486593 |
T |
|
| Q |
205 |
ttgtaattattatcccccaggtaacattcctggccaattacc |
246 |
Q |
| |
|
||| |||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
2486594 |
ttgcaattatgatccccctggtaacattgctggccaattacc |
2486635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2470876 - 2471118
Alignment:
| Q |
8 |
aatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttg |
107 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||| | ||||||||| | |||| ||| || | ||||||| |||| ||||| |||| |||| ||| |
|
|
| T |
2470876 |
aatattgcggtgagcaccggctacaagagtgtcagagatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttg |
2470975 |
T |
|
| Q |
108 |
atggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttatttg |
207 |
Q |
| |
|
||||||||||| ||||| ||||||||| | ||| | |||| |||| |||||||||||||||||| |||| ||||||| || ||||| ||| ||| |
|
|
| T |
2470976 |
gtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttg |
2471075 |
T |
|
| Q |
208 |
taattattatcccccaggtaacattcctggccaattaccgtac |
250 |
Q |
| |
|
|||||| | || || ||||||||| |||| |||||||||||| |
|
|
| T |
2471076 |
caattatgacccacctggtaacattgctggtcaattaccgtac |
2471118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 1175506 - 1175437
Alignment:
| Q |
481 |
gtatgaagagcatggttcgatccgcttgaaccactaatcgcttctgccgtcgaattccaaaagtttggga |
550 |
Q |
| |
|
|||| ||||| |||||| |||| |||||||||||| ||||||| || ||||||| |||||||||||||| |
|
|
| T |
1175506 |
gtatcaagagtatggtttgatcgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttggga |
1175437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 731 - 940
Target Start/End: Complemental strand, 17927621 - 17927414
Alignment:
| Q |
731 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
830 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
|
|
| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
|
| Q |
831 |
tgaagttattggattaattgagaggcggtttggtaataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
929 |
Q |
| |
|
||||||||||||||||||| |||||| | | ||||||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
|
|
| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
930 |
gataaattgta |
940 |
Q |
| |
|
||||||||||| |
|
|
| T |
17927424 |
gataaattgta |
17927414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 3775795 - 3775671
Alignment:
| Q |
496 |
ttcgatccgc-ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgttttaggtttgtcttttgaatattcgttatattgatagtga |
594 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||||| || | |||| |||||||| ||| ||||||| || ||| |
|
|
| T |
3775795 |
ttcgatccgccttgaaccacttgtcgcttctgttatcgatttcaaaaagtttgggattgtgtttgatttgccttttgaagattgattatattaatcatga |
3775696 |
T |
|
| Q |
595 |
tttggttttcttaatttgttatttt |
619 |
Q |
| |
|
||||||| || || |||||||||| |
|
|
| T |
3775695 |
tttggttctcccaacttgttatttt |
3775671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 24135082 - 24135127
Alignment:
| Q |
462 |
tatttgtattgttaacatggtatgaagagcatggttcgatccgctt |
507 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| ||||||||| |
|
|
| T |
24135082 |
tatttgtattgttaagatggtatcaagagcgtggtttgatccgctt |
24135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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