View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-10 (Length: 576)
Name: NF4699-Insertion-10
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-10 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 269 - 576
Target Start/End: Original strand, 52075656 - 52075963
Alignment:
| Q |
269 |
tcttagtcgaacctcccctcggaggtgatggggtgctgttttttcggggctatgcagcttctgctgctgctgtcttttgttgcctgtgcctctgccgttt |
368 |
Q |
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| T |
52075656 |
tcttagtagaacctcccctcggaggtgatggggtgctgttttttcggggctatgcagcttctgctgctgctgtcttttgttgcctgtgcctctgctgttt |
52075755 |
T |
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| Q |
369 |
cttctggtattcggttctgttatggggctgagttgctgtgggctggtagcagtttttgttgcctggggggtgtgttaggggtgctgttggcagcttgcag |
468 |
Q |
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| T |
52075756 |
cttctggtattcggttctgttatggggctgagttgctgtgggctggtagcagtttttgttgcctgggtggtgtgttaggggtgctgttggcagcttgcag |
52075855 |
T |
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| Q |
469 |
ctcggttggctactacttgctgggcggttgttttttggggg-ttctagttggcttagggaggttcttgttggtctctttctaggtgggttgggcggtgtt |
567 |
Q |
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| T |
52075856 |
ctcggttggctactacttgctgggcggttgttttttgggggcttctagttggcttagggaggttcttgttggtctctttctaggt-ggttgggcggtgtt |
52075954 |
T |
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| Q |
568 |
tgagcgggc |
576 |
Q |
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| T |
52075955 |
tgagcgggc |
52075963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 52075484 - 52075654
Alignment:
| Q |
8 |
ttaatgcggtggttagactattatttcattcttccccctaatctcttcattcattgggagtgttggcacggg-aaaggaattatttggttagcaacaatt |
106 |
Q |
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| T |
52075484 |
ttaatgcggtggttagactattatttcattcttccccctaatctcttcattcattgggagtgttggcacggggaaaggaattatttggttagcaacaatt |
52075583 |
T |
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| Q |
107 |
tgggtgttatggaaaactaggaatgataaagttttcaatgattttaa--ttgaggtggattctatggtgga |
175 |
Q |
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| T |
52075584 |
tgggtgttatggaaaactaggaatgataaagttttcaatgattttaattttgaggtggattctatggtgga |
52075654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 49456757 - 49456896
Alignment:
| Q |
89 |
atttggttagcaacaatttgggtgttatggaaaactaggaatgataaagttttcaatgattttaa--ttgaggtggattctatggtggaggaggtgaaag |
186 |
Q |
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| T |
49456757 |
atttggttagcaataatttgggtgttgtggaaaacgcggaatgacaaaattttcaatgacaataactttgaggtggacgacattgtggaggaggtgaaag |
49456856 |
T |
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| Q |
187 |
ttttggcttggaagtgggttatgtatagaatgcacattcc |
226 |
Q |
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| T |
49456857 |
tgttggcgtggaagtggacaatgagtagaatgcacattcc |
49456896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 6164499 - 6164584
Alignment:
| Q |
155 |
tgaggtggattctatggtggaggaggtgaaagttttggcttggaagtgggttatgtatagaatgcacattccggtatgtttgtttt |
240 |
Q |
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| T |
6164499 |
tgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtatgtttt |
6164584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 229
Target Start/End: Complemental strand, 26447186 - 26447044
Alignment:
| Q |
89 |
atttggttagcaacaatttgggtgttatggaaaactaggaatgataaagttttcaatgattttaa--ttgaggtggattctatggtggaggaggtgaaag |
186 |
Q |
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| T |
26447186 |
atttggctagcaaccatttgggcgttgtggaaaacccggaatgataaagttttcaatgatgctaattttgaggtggatgtcattgtggaaaaggtgaaag |
26447087 |
T |
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| Q |
187 |
ttttggcttggaagtgggttatgtatagaatgcacattccggt |
229 |
Q |
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| T |
26447086 |
tgttggcttggaagtgggcgatgtgtagaatgcgtattccggt |
26447044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 368425 - 368504
Alignment:
| Q |
128 |
aatgataaagttttcaatgattttaatt--gaggtggattctatggtggaggaggtgaaagttttggcttggaagtgggt |
205 |
Q |
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| T |
368425 |
aatgacaaggtttttaatgatgttaattttgaggtggatgctatggtggaggaggtgaaagtcaaggcttggaggtgggt |
368504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 3700507 - 3700610
Alignment:
| Q |
104 |
atttgggtgttatggaaaactaggaatgataaagttttcaatgattttaatt--gaggtggattctatggtggaggaggtgaaagttttggcttggaagt |
201 |
Q |
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| T |
3700507 |
atttgggtgttatggaatacccgaaatgagaaagtttttaacgatgttaatgtagaggtggatgcaattgttgaagaggtgaaagtgttggcttggaagt |
3700606 |
T |
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| Q |
202 |
gggt |
205 |
Q |
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|||| |
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| T |
3700607 |
gggt |
3700610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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