View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-16 (Length: 107)
Name: NF4699-Insertion-16
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-16 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: scaffold0155 (Bit Score: 80; Significance: 5e-38; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 538 - 439
Alignment:
| Q |
8 |
ctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcggcatcgtca |
107 |
Q |
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| T |
538 |
ctatctctcgatcctgaactccacacttacttcgtcgggctagcccaaacccacggcccaattttcaagctcaggcttggtagcaaactcggtatcgtca |
439 |
T |
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Target: chr4 (Bit Score: 71; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 42390279 - 42390193
Alignment:
| Q |
8 |
ctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaa |
94 |
Q |
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| T |
42390279 |
ctatctctcgatcccgaactccacacttacttcgcctggctagcccaagcccacggcccaattttcaagctcaggcttggtagcaaa |
42390193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 42394648 - 42394551
Alignment:
| Q |
8 |
ctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcggcatcgt |
105 |
Q |
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| T |
42394648 |
ctatcactcgagccagagcttcacacttacttcaccggcctagcccaagcccacggcccaattttcaagctcaggcttggtagcaaacttggcatcgt |
42394551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 42378733 - 42378642
Alignment:
| Q |
8 |
ctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcgg |
99 |
Q |
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| T |
42378733 |
ctatcactcgacccagaacttcacacttacttcgccggactagcccaagcccacggcccaatttacaagctctggctcggaagcaaactcgg |
42378642 |
T |
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