View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-17 (Length: 166)
Name: NF4699-Insertion-17
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-17 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 3e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 31228278 - 31228437
Alignment:
| Q |
7 |
agtctgcatgttccaaaaat-atacatgcaggttcttgcattttttcgaacaaaattacaaagagattccaaatctttatcttgagtaaccttggattca |
105 |
Q |
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| T |
31228278 |
agtctgcatgttccaaaaattacacatgcaggttcttgcattttttggaacaaaagtccaaagagattc-aaatctttatctcgagtaaccttggattca |
31228376 |
T |
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| Q |
106 |
atcatacctgctcttcgtgcatgtctaatcaaatgagcgaacattttctctgagagttgta |
166 |
Q |
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| T |
31228377 |
atcatacatgctcttcgtgcatgtctaatcaaatgagcgaacattttctctgagagttgta |
31228437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 31244521 - 31244679
Alignment:
| Q |
10 |
ctgcatgttccaaaaat-atacatgcaggttcttgcattttttcgaacaaaa-ttacaaagagattccaaatctttatcttgagtaaccttggattcaat |
107 |
Q |
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| T |
31244521 |
ctgcatgttccaaaaattacacatggaagctcttgcagtttttggaacaaaaattacaaagagattccaaatcttcatctcgagtaaccttggattcaat |
31244620 |
T |
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| Q |
108 |
catacctgctcttcgtgcatgtctaatcaaatgagcgaacattttctctgagagttgta |
166 |
Q |
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| T |
31244621 |
catacaggctcttcgtgcatgtctaatcaaataagcaaacattttctgtaagagttgta |
31244679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 31228272 - 31228146
Alignment:
| Q |
42 |
tgcattttttcgaacaaaattacaaagagattccaaatctttatcttgagtaaccttggattcaatcatacctgctcttcgtgcatgtc--taatcaaat |
139 |
Q |
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| T |
31228272 |
tgcagtttttggaacaaaatttgatatagattccaaatcttcatctcgggtaaccatggtttgaatcctgcaggctcttcgtgcatgtctataatcacat |
31228173 |
T |
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| Q |
140 |
gagcgaacattttctctgagagttgta |
166 |
Q |
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| T |
31228172 |
gagccgacattatctctgagagttgta |
31228146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 31244463 - 31244386
Alignment:
| Q |
91 |
gtaaccttggattcaatcatacctgctcttcgtgcatgtc--taatcaaatgagcgaacattttctctgagagttgta |
166 |
Q |
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| T |
31244463 |
gtaaccttggattcaatcctgcaggctcttcgtgcatgtctataatcacatgagctgacattatctcttagagttgta |
31244386 |
T |
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