View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-18 (Length: 53)
Name: NF4699-Insertion-18
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 44; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 39536609 - 39536562
Alignment:
| Q |
6 |
cagctctttcttctttccccttccctgcaactggtatctctttttcag |
53 |
Q |
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| T |
39536609 |
cagctctttcttcttttcccttccctgcaactggtatctctttttcag |
39536562 |
T |
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Target: chr4 (Bit Score: 27; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 27; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2462107 - 2462153
Alignment:
| Q |
6 |
cagctctttcttctttccccttccctgcaactggtatctctttttca |
52 |
Q |
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||||||||||||||| || |||||||||||||||| ||||| |||| |
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| T |
2462107 |
cagctctttcttcttctccattccctgcaactggtacctcttcttca |
2462153 |
T |
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