View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4699-Insertion-2 (Length: 978)
Name: NF4699-Insertion-2
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 136 - 827
Target Start/End: Complemental strand, 33106789 - 33106114
Alignment:
| Q |
136 |
ccacatcattagtattattaataattcttnnnnnnntcaaaattagtagtactgttaattaaggacacagtttatcttatgtgtaatttaaattattatt |
235 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33106789 |
ccacatcattagtattagtaataattcttaaaaaaatcaaaattagtagtactgttaattaaggacacagtttatctcatgtgtaatttaaattattatt |
33106690 |
T |
|
| Q |
236 |
ttatggttggtaacagttgttggtgatatcatcaaattcactatgactgctcattaaatggtccgccctgcctcgggtgcatagataagtttctttattt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33106689 |
ttatggttggtaacagttgttggtgatatcatcaaattcactatgactgctcattaaatggtccgccctgcctcgggtgcatagataagtttctttattt |
33106590 |
T |
|
| Q |
336 |
ttagttcatgcccaaaattagtttagcaaaataacatttgaattttcaataagctgtttttatttatttaaaataactaatgtcaacaatagtcttctaa |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
33106589 |
ttagttcatgcccaaaattagtttagcaaaataacatttgaattttcaataagctgtttttatttatttaaaataactaat-------------ttcaaa |
33106503 |
T |
|
| Q |
436 |
aagaaaaaacaattggtagagtcttgaatttagtcagttacagctgaattgagcttagggaaacgtttcttgttcataatgcataatgagcgatttaaat |
535 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33106502 |
agaaaaaaacaattggtagagtcttgaatttagtcagttacaactgaattgagcttagggaaacgtttcttgttcataatgcataatgagcgatttaaat |
33106403 |
T |
|
| Q |
536 |
tactcaatcatttcctcnnnnnnnnnnnnnnnnnnntactcaataatcannnnnnngtttaaggaacatactcaataatcattatcgctaccttccaaat |
635 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33106402 |
tactcaatcatttcctcaaaaaataaaaaataaaaatactcaataatca-ttttttgtttaaggaacatactcaataatcattatcgctaccttccaaat |
33106304 |
T |
|
| Q |
636 |
gattcacaataattttctctagnnnnnnnnnnnnngagatttgaacattatttaactagtttatttgtggtattgaataatgattgcatgcaaaattgaa |
735 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33106303 |
gattcacaataattttctctagaaaaaataaaaaagagatttgaacattatttaactagtttatttgtggtattgaatattgattgcatgcaaaattgaa |
33106204 |
T |
|
| Q |
736 |
aggataatggtgatcgcccaagtcaacgagtctatggtaatgggtcgtagggtcgactcaaggggttgtcacaaaagaaagggttttaggcc |
827 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
33106203 |
aggataatggtgatcgcccaagtcaacgagtctatggtaatgggtcatagagt--actcaaggggttgtcactaaagaaagggttttaggcc |
33106114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 33106917 - 33106816
Alignment:
| Q |
6 |
atggtatatgcccattatggagactttaatataaggttattcatactttcaagtcaacgtgttcacaatttgcttgcctacctgttagttattaaaggcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33106917 |
atggtatatgcccattatggagactttaatataaggttattcatactttcaagtcaacgtgttcgcaatttgcttgcctacctgttagttattaaaggcc |
33106818 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
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|
| T |
33106817 |
tc |
33106816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 904 - 978
Target Start/End: Complemental strand, 33106038 - 33105964
Alignment:
| Q |
904 |
ctaactcggttggtagttaaatagagagttgttgacttataatttatgccacaagtgtgatcgtaaagatagtta |
978 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33106038 |
ctaactcggttggtagttaaatggagagttgttgacttataatttatgccacaagtgtgatcgtaaagatagtta |
33105964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 15667130 - 15667097
Alignment:
| Q |
378 |
ttttcaataagctgtttttatttatttaaaataa |
411 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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|
| T |
15667130 |
ttttgaataagctgtttttatttatttaaaataa |
15667097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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