View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-3 (Length: 893)
Name: NF4699-Insertion-3
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 501 - 893
Target Start/End: Original strand, 21148690 - 21149078
Alignment:
| Q |
501 |
aggggtttgaagatttaatcattgattgctagactcataaggaggttattaaagggaatataagtttacataaataagtgatatatgtgagaaggagctg |
600 |
Q |
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| T |
21148690 |
aggggtttgaagatttaatcactgattgctagactcataaggaggttattaaagggaatataagtttacataaataagtgatatacgtgagaaggagctg |
21148789 |
T |
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| Q |
601 |
aattggcttctaggtatcatgagaaggatttacttaggaatttaaaatagattattgagaaggacatacgcattaatgcagctgtagaagtgcttctagc |
700 |
Q |
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| T |
21148790 |
aattggcttctaggtatcatgagaaggatttacttgggaatttaaaatagattattgagaaggacatacacattaatgcagctgtagaagtgattctagc |
21148889 |
T |
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| Q |
701 |
tagattattgaaagtttacgattataaaaccaaattatattattccttaaacctttcgatactctctatgggttactttgcatagccaatgctttacaaa |
800 |
Q |
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| T |
21148890 |
tagattattgaaagtttacaattataaaaccaaattatattattccttaaacctttcaatacttcctatgggttactttgcatagccaatgctttacaaa |
21148989 |
T |
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| Q |
801 |
ctttgccattgcatcactctttcctttccacttacaagacagcaacatgggattctcagaaacctccctgtctg-tttgctattgttcatttta |
893 |
Q |
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| T |
21148990 |
ctttgccattgcatcactctttcct-----cttaaaagacagcaacatgggattctcagaaacctccctgtctgttttgctattgttcatttta |
21149078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 21148051 - 21148307
Alignment:
| Q |
8 |
gttaagtcttttatttacttgttcatagcattcaaattgttcttttatttgctttttctcctttcatatggagtatggcattgcttatcttcatatgcta |
107 |
Q |
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| T |
21148051 |
gttaagtcttttatttacttgttcatagcattcaaattgttcttttatttactttttctcctttcatatggagtatggcattgcttatcttcatatgcta |
21148150 |
T |
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| Q |
108 |
attttatgacctttatatttaccgattcgtgtcattgagagtgctacttgttctgattannnnnnnctgctctctttgcttcattttgtctctatttagt |
207 |
Q |
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| T |
21148151 |
attttacgacctttttatttacggattcgtgtcattgagggtgctacttgttctgattatttttttctgctctctttgcttcattttgtctctatttagt |
21148250 |
T |
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| Q |
208 |
ttgtctaatatatccgttttttactcattctgataaaatttctttaccgaactatgc |
264 |
Q |
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| T |
21148251 |
ttgtctaatatatccgttttatactcattctgataaaatttctttaccgaactatgc |
21148307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 263 - 424
Target Start/End: Original strand, 21148452 - 21148613
Alignment:
| Q |
263 |
gcaattgcgtcctgatgcgggtgcggacattgtcaaacccacactattgtggccaatcgcattatgtggtccgcaatttgaaactacggattgtagtgca |
362 |
Q |
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| T |
21148452 |
gcaattgcggcctgatgcgggtgcggacattgtcaaacccacactattgtggccgatcgtgttatgtggtccgcaatttgaaactacggattgtagtgca |
21148551 |
T |
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| Q |
363 |
ttgcgaatgttggactctcaaggtttgtcaatcctcaaggattgatccccatgtgaggaatg |
424 |
Q |
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| T |
21148552 |
ttgcgaatgttggactctcaaggtttgtcaatcctcaaggattgatccccatgtgaggaatg |
21148613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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