View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-4 (Length: 848)
Name: NF4699-Insertion-4
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Complemental strand, 44535980 - 44535488
Alignment:
| Q |
7 |
aaatacaacatcacttcaatcaaagcttaaatgttttgctgatagaatgaacaccaagtaatcatgaattgcaagggagcttgtaaatcgaagccatttt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
44535980 |
aaatacaacatcacttcaatcaaagcttaaatgttttgctgatagaatgaacaccaagta--catcaattgcaagggagcttgtaaatcgaagccatttt |
44535883 |
T |
|
| Q |
107 |
ataatagtatttaacnnnnnnngtgttctgaattttaattgcttagtttgaagcatgaaaatgaaaagggagaaagtatacgtgagtgaattacacgcgc |
206 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535882 |
ataatagtatttaactttttttgtgttatgaattttaattgtttagtttgaagcatgaaaatgaaaagggagaaagtatacgtgagtgaattacacgcgc |
44535783 |
T |
|
| Q |
207 |
gcgtaatatcagaaaaagatacaaaatttgaaatttaaagataacacaagatctgaaccgttagttataatctaatggttgtcctttaatgctcccatct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44535782 |
gcgtaatatcagaaaaagatacaaaatttgaaatttaaagataacacaagatctgaaccgttagttataatctaatggttgtcctttaatgctctcatct |
44535683 |
T |
|
| Q |
307 |
ctcacattaaaactcctctaacaaaccagatgaaaaatgcatgaaccaattcctcttttgggcactattttaatgcaaaatatagggacagtataattgg |
406 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44535682 |
ctcacattaaaactcctctaacaagccagatgaaaaatgcatgaaccaattcctcttttgggcactattgtaatgcaaaatatagggacagtataattgg |
44535583 |
T |
|
| Q |
407 |
ttgcgcaccttatttctgatcttatacatctaaaccacgtatgcttcttcaaaaattattaaagagagtaaaagctaggaaacaacaaatcaagc |
501 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535582 |
ttgcgcaccttatttctgatcttatacatctaaaccatgtatgcttcttcaaaaattattaaagagagtaaaagctaggaaacaacaaatcaagc |
44535488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 596 - 848
Target Start/End: Complemental strand, 44535336 - 44535086
Alignment:
| Q |
596 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535336 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
44535237 |
T |
|
| Q |
696 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaagggagtcctcaactttctttacctcattatgatcatatgataatgaa |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535236 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaa-ggagtcctcaactttctttacctcattatgatcatatgataatgaa |
44535138 |
T |
|
| Q |
796 |
gttgatgagtttctcatcttctccctcatgttgggtagtaaccttttcctcta |
848 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
44535137 |
gttgatgagtttctcatcttctccctcatgtt-ggtagtaaccttttcctcta |
44535086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 44536556 - 44536605
Alignment:
| Q |
274 |
taatctaatggttgtcctttaatgctcccatctctcacattaaaactcct |
323 |
Q |
| |
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||||| || |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
44536556 |
taatccaagggttgtcctttaatgctctcatctctcacattaaaactcct |
44536605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 554
Target Start/End: Complemental strand, 44535443 - 44535405
Alignment:
| Q |
516 |
gatgatgatatagtgcatacaccaaacttaaacattaat |
554 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
44535443 |
gatgatgatataatgcatacaccaaacttaaacattaat |
44535405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 606 - 713
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
606 |
ccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
705 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| |||| || || || | ||| || ||||| ||||||||||||||||| ||||||| |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
|
| Q |
706 |
tgtcttct |
713 |
Q |
| |
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| |||||| |
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| T |
2579956 |
tatcttct |
2579963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 22913974 - 22913888
Alignment:
| Q |
192 |
gtgaattacacgcgcgcgtaatatcagaaaaagatacaaaatttgaaatttaaagataacacaagatctgaaccgttagttataatc |
278 |
Q |
| |
|
|||| ||||||||||||||||| | ||| ||||| |||||||||| ||||| ||| ||||||||||||| ||||||||||| ||||| |
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| T |
22913974 |
gtgagttacacgcgcgcgtaattttagataaagagacaaaatttgcaatttcaaggtaacacaagatctaaaccgttagttttaatc |
22913888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 25746761 - 25746812
Alignment:
| Q |
274 |
taatctaatggttgtcctttaatgctcccatctctcacattaaaactcctct |
325 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
25746761 |
taatccaatggttgtcctttaatgctctcatctctcattttaaaactcctct |
25746812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 7588173 - 7588224
Alignment:
| Q |
274 |
taatctaatggttgtcctttaatgctcccatctctcacattaaaactcctct |
325 |
Q |
| |
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||||| || |||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
7588173 |
taatccaacggttgtcctttaatgctctcatctctcattttaaaactcctct |
7588224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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