View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699-Insertion-6 (Length: 787)
Name: NF4699-Insertion-6
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 749; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 8 - 784
Target Start/End: Original strand, 29243309 - 29244087
Alignment:
| Q |
8 |
gagacaacatgaaatctatttggggrctaaatttcagtcaatgagtcgaagaaacttgggtatagggttcactcgcgttgaagaagtaattttaggttat |
107 |
Q |
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| T |
29243309 |
gagacaacatgaaatctatttgggggctaaatttcagtcaatgagtcgaagaaacttgggtatagggttcactcgcgttgaagaagtaattttaggttat |
29243408 |
T |
|
| Q |
108 |
ttgtattattgtttttcaaaaatttggaagctgatttatattttaacgttcttttataaagtttgagtaaaaagatgattttggttaaagattataaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29243409 |
ttgtattattgtttttcaaaaatttggaagctgatttatattttaacgttcttttataaagtttgagtaaaaagatgattttggttaaagattataaacc |
29243508 |
T |
|
| Q |
208 |
agttctcttaataaagtttggtaattgacttttgaaaatttatggttcagttcatgaaccatttaattggtttggtctcttatagttcagtgtggttcat |
307 |
Q |
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| T |
29243509 |
agttctcttaataaagtttggtaattgacttttgaaaatttatggttcagttcatgaaccatttaattggtttggtctcttatagttcagtgtggttcat |
29243608 |
T |
|
| Q |
308 |
tttactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgcttttggtattatcttttgatgacag |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29243609 |
tttactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgcttttggtattatcttttgataacag |
29243708 |
T |
|
| Q |
408 |
ttgcgaagtttggtgtgatatgatcaatcagttctatgatcactgtcttctgatagtagggttctcaatatgcttctactttacgcctggaaagttgaat |
507 |
Q |
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| T |
29243709 |
ttgcgaagtttggtgtgatatgatcaatcagttctatgatcattgtcttctgatagtagggttctcaatatgcttctactttacgcctggaaagttgaat |
29243808 |
T |
|
| Q |
508 |
gatgaaggtgtagtttagaaaa-ggggttggctcatagtaatggactatggtgatggtttcatatggtaataaagatgatgagtttacacggttcttaaa |
606 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29243809 |
gatgaaggtgtagtttagaaaagggggttggctcatagtaatggactatggtgatggtttcatatggtaataaagatgatgagtttacacggttcttaaa |
29243908 |
T |
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| Q |
607 |
aatgaacaagagttatggtgtgctagttacgtttatgagctaaatcttagttgtttgttgattgtttgtggttagaggagatagatgtatgaagtgatgg |
706 |
Q |
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| T |
29243909 |
aatgaacaagagttatggtgtgctagttacgtttatgagctaaatcttagttgtttgttgattgtttgtggttagaggagatagatgtatgaagtgatgg |
29244008 |
T |
|
| Q |
707 |
tggagatccctttctttggttatgtcttctcctttctttagttctcccctctttttattcccttctc-tgctttggttt |
784 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29244009 |
tggagacccctttctttggttatgtcttctcctttctttagttctcccctctttttattcccttctcttgctttggttt |
29244087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 51554746 - 51554684
Alignment:
| Q |
250 |
tggttcagttcatgaaccatttaattggtttgg-tctcttatagttcagtgtggttcatttta |
311 |
Q |
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| T |
51554746 |
tggttcagttcatgaaccatttaatatatttggttcttttatggttcagtgtggttcaattta |
51554684 |
T |
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