View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4699-Insertion-7 (Length: 680)

Name: NF4699-Insertion-7
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4699-Insertion-7
NF4699-Insertion-7
[»] chr2 (1 HSPs)
chr2 (8-664)||(38173240-38173895)


Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Original strand, 38173240 - 38173895
Alignment:
Q  8 aaccacaggattcaaagttcaaacccaccaagcacatgtctttaaactgaatataagtaaaatatcattagcatctaaatcaaccagttaatatttcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38173240 aaccacaggattcaaagttcaaacccaccaagcacatgtctttaaactgaatataagtaaaatatcattagcatctaaatcaaccagttaatatttcaaa 38173339  T
Q  108 ctaatcagtacgaatgacctgcattaccattcagaataaatcatatt-gtcaaatgaacaaacatttaatctgcaagacgttaataaaatnnnnnnn-ca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||        ||    
T  38173340 ctaatcagtacgaatgacctgcattaccattcagaataaatcatatttgacaaatgaacaaacatttaatctgcaagacgtaaataaaataaaataaaca 38173439  T
Q  206 atacctcaagctcgttcgttctactttcttgagactgagactgatcatcatcatcgccgccgccgccaacatcaaagcaccagctagtcgtttcctcgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||   ||||||||||||||||||||||||||||||||||||    
T  38173440 atacctcaagctcgttcgttctactttcttgagactgagactgatcatcatcattgtcgcc---gccaacatcaaagcaccagctagtcgtttcctcgga 38173536  T
Q  306 atcaacttctttatcttcagaattagaatcaacgatctcgccttcttcatactcatactcctcactctcggttctttcaatccaactactatcactatcc 405  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38173537 atcatcttctttatcttcagaattagaatcaacgatctcgccttcttcatactcatactcctcactctcggttctttcaatccaactactatcactatcc 38173636  T
Q  406 atttcattatcatcatcattggcaataatctcatctctaatatcaatcatttgagtaccatcatagttattagcaataatgtcgcctctaatttcatcat 505  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38173637 atttcattaccatcatcattggcaataatctcatctctaatatcaatcatttgagtaccatcatagttattagtaataatgtcgcctctaatttcatcat 38173736  T
Q  506 cattagcgataatctcgcttctaacaacagcatcaataatctcgacattttcattaacttcattttcaacaccggaacacgaaacaggaggatccgaaag 605  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38173737 cattagagataatctcgcttctaacaacagcatcaataatctcgacattttcattaacttcattttcaacaccggaacacgcaacgggaggatccgaaag 38173836  T
Q  606 aggaggaggagaatcaggggcataatcaaaattaatgaaggaatcggcgagggcgaaaa 664  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38173837 aggaggaggggaatcaggggcataatcaaaattaatgaaggaatcggcgagggcgaaaa 38173895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University