View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4699-Insertion-8 (Length: 642)

Name: NF4699-Insertion-8
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4699-Insertion-8
NF4699-Insertion-8
[»] chr1 (18 HSPs)
chr1 (11-242)||(31126382-31126612)
chr1 (537-642)||(19151603-19151707)
chr1 (537-642)||(23678659-23678763)
chr1 (537-639)||(25871988-25872089)
chr1 (542-642)||(17224471-17224570)
chr1 (250-311)||(19151991-19152052)
chr1 (251-311)||(25871695-25871755)
chr1 (252-311)||(23679050-23679109)
chr1 (252-299)||(17224158-17224205)
chr1 (537-578)||(17224425-17224466)
chr1 (542-601)||(25871952-25872009)
chr1 (537-579)||(19151747-19151789)
chr1 (537-579)||(23678803-23678845)
chr1 (72-204)||(31077104-31077233)
chr1 (537-601)||(19151686-19151748)
chr1 (537-601)||(23678742-23678804)
chr1 (16-93)||(31128649-31128725)
chr1 (177-222)||(31131127-31131172)
[»] chr8 (6 HSPs)
chr8 (512-642)||(31387146-31387276)
chr8 (538-642)||(24924283-24924386)
chr8 (385-444)||(31387026-31387085)
chr8 (250-312)||(31386891-31386953)
chr8 (538-576)||(24924404-24924442)
chr8 (252-284)||(1086584-1086616)
[»] chr3 (7 HSPs)
chr3 (539-642)||(13822693-13822796)
chr3 (537-642)||(4264770-4264874)
chr3 (248-311)||(4264440-4264503)
chr3 (256-311)||(13823009-13823064)
chr3 (558-601)||(13822777-13822820)
chr3 (537-579)||(4264688-4264730)
chr3 (537-601)||(4264729-4264791)
[»] chr6 (2 HSPs)
chr6 (543-642)||(22052902-22053002)
chr6 (540-577)||(22053009-22053046)
[»] chr2 (2 HSPs)
chr2 (543-642)||(44363287-44363387)
chr2 (540-577)||(44363394-44363431)
[»] chr7 (5 HSPs)
chr7 (537-642)||(41546347-41546451)
chr7 (252-311)||(41546039-41546098)
chr7 (537-579)||(41546265-41546307)
chr7 (537-601)||(41546306-41546368)
chr7 (262-311)||(12103200-12103249)
[»] chr4 (7 HSPs)
chr4 (537-642)||(55039645-55039749)
chr4 (537-642)||(14055862-14055965)
chr4 (250-311)||(55039335-55039396)
chr4 (251-311)||(14056244-14056304)
chr4 (537-578)||(14056006-14056047)
chr4 (537-579)||(55039563-55039605)
chr4 (537-601)||(55039604-55039666)
[»] scaffold0008 (1 HSPs)
scaffold0008 (537-642)||(86473-86577)
[»] chr5 (1 HSPs)
chr5 (260-308)||(1501218-1501266)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 9e-81; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 31126612 - 31126382
Alignment:
Q  11 tatccattgtatgcggcggtggaagttggcggaaaaagcaaaagtggaaccgaaaattggataaggtttgggaatggcggtggaagagggtgtttttggg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  31126612 tatccattgtatgcggcggtggaagttggcggaaaaagcaaatatggaaccgaaaattggataaggtttgggaatggcggtggaggagtgtgtttttggg 31126513  T
Q  111 gattttgataattttgttttggctatgaataagaacgaaatgagagttacagagtaataaagtaagaaagaaaccaatgtttcgagttccattttgtacg 210  Q
    ||| |||||| |||||||||||||| |||||||||||| | |||||||||||||   ||||||||||||||||||||| ||||||||||||||| |||||    
T  31126512 gatattgatagttttgttttggctaagaataagaacgacacgagagttacagag---taaagtaagaaagaaaccaatatttcgagttccatttggtacg 31126416  T
Q  211 taagata--tttcactttggttgctatcacattg 242  Q
    |||||||  ||| |||| |||||||||| |||||    
T  31126415 taagatatttttgacttgggttgctatcgcattg 31126382  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 537 - 642
Target Start/End: Complemental strand, 19151707 - 19151603
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19151707 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 19151609  T
Q  637 caggta 642  Q
     |||||    
T  19151608 aaggta 19151603  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 537 - 642
Target Start/End: Complemental strand, 23678763 - 23678659
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23678763 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 23678665  T
Q  637 caggta 642  Q
     |||||    
T  23678664 aaggta 23678659  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 537 - 639
Target Start/End: Original strand, 25871988 - 25872089
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25871988 gccgccgtctcctgctcaatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacaatctctttcacagtgttccttcttcaact 25872086  T
Q  637 cag 639  Q
    |||    
T  25872087 cag 25872089  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 542 - 642
Target Start/End: Original strand, 17224471 - 17224570
Alignment:
Q  542 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 641  Q
    ||||| |||||||||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17224471 cgtcttctgctccatcttccattcaaccctagc-gagcgccgccgtcacctgctccatctccgacgatctcttttacagtgttcctttttcaactcaggt 17224569  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 19152052 - 19151991
Alignment:
Q  250 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  19152052 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 19151991  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 25871695 - 25871755
Alignment:
Q  251 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  25871695 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttttgtggca 25871755  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 23679109 - 23679050
Alignment:
Q  252 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  23679109 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 23679050  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 17224158 - 17224205
Alignment:
Q  252 gagcagtgataggtgtaccaccataggtggcaacacatcttataccac 299  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17224158 gagcagtgataggtgtaccaccataggtggcaatacaccttataccac 17224205  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 17224425 - 17224466
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 578  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  17224425 gccgccgtctcccgctccatcttccgttcaaccctagccgcg 17224466  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 601
Target Start/End: Original strand, 25871952 - 25872009
Alignment:
Q  542 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    |||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||    
T  25871952 cgtctcctgctccatcttccgttcaaccctagc--ctcgccgccgtctcctgctcaatct 25872009  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Complemental strand, 19151789 - 19151747
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 579  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  19151789 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 19151747  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Complemental strand, 23678845 - 23678803
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 579  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  23678845 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 23678803  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 31077233 - 31077104
Alignment:
Q  72 taaggtttgggaatggcggtggaagagggtgtttttggggattttgataattttgttttggctatgaataagaacgaaatgagagttacagagtaataaa 171  Q
    |||| |||||||||||||||||| |||||||||||| || |||| |||  |||| |  |||||| |||||||||| ||| ||| | | | |||    |||    
T  31077233 taagttttgggaatggcggtggaggagggtgttttttggaatttggattgttttttagtggctaagaataagaaccaaacgagtggtgctgag---aaaa 31077137  T
Q  172 gtaagaaagaaaccaatgtttcgagttccattt 204  Q
    |||| ||||||| ||| ||||||||||||||||    
T  31077136 gtaacaaagaaagcaaagtttcgagttccattt 31077104  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 19151748 - 19151686
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  19151748 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 19151686  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Complemental strand, 23678804 - 23678742
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  23678804 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 23678742  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 31128725 - 31128649
Alignment:
Q  16 attgtatgcggcggtggaagttggcggaaaaagcaaaagtggaaccgaaaattggataaggtttgggaatggcggtgg 93  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||| || | | ||| ||| ||||||| |||||    
T  31128725 attgtatgcggccgtggaagttgg-ggaaaaagcaaaagcggaaccgaagatagaacaagctttaggaatggtggtgg 31128649  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 31131172 - 31131127
Alignment:
Q  177 aaagaaaccaatgtttcgagttccattttgtacgtaagatatttca 222  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  31131172 aaagaaaccaatgtttcgggttccatttggtacgtaagatacttca 31131127  T

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Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 512 - 642
Target Start/End: Original strand, 31387146 - 31387276
Alignment:
Q  512 gttcaaccttagccgcacgccgccggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatct 611  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31387146 gttcaaccttagccgcacgccgtcggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccgccgtctcctgctccatctccgatgatct 31387245  T
Q  612 ctttcacagtgttcctttttcaactcaggta 642  Q
    |||||||||||||||||||||||||||||||    
T  31387246 ctttcacagtgttcctttttcaactcaggta 31387276  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 538 - 642
Target Start/End: Complemental strand, 24924386 - 24924283
Alignment:
Q  538 ccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactc 637  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24924386 ccgccgtgtcctgctccatcttccgctcaaccctagc-gcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttgaactc 24924288  T
Q  638 aggta 642  Q
    |||||    
T  24924287 aggta 24924283  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 31387026 - 31387085
Alignment:
Q  385 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387026 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 31387085  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 31386891 - 31386953
Alignment:
Q  250 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggcat 312  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31386891 aagagcagtgataggtgtaccaccataggtggcaacacaccttataccactcttatgtggcat 31386953  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 24924442 - 24924404
Alignment:
Q  538 ccgccgtctcctgctccatcttccgttcaaccctagccg 576  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  24924442 ccgccgtctcctgctccatcttccgttgaaccctagccg 24924404  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 1086616 - 1086584
Alignment:
Q  252 gagcagtgataggtgtaccaccataggtggcaa 284  Q
    ||||||||||| |||||||||||||||||||||    
T  1086616 gagcagtgataagtgtaccaccataggtggcaa 1086584  T

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Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 642
Target Start/End: Complemental strand, 13822796 - 13822693
Alignment:
Q  539 cgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 638  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13822796 cgccgtctcctgctccatcttccattcaaccctagccgctagccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 13822697  T
Q  639 ggta 642  Q
    ||||    
T  13822696 ggta 13822693  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 537 - 642
Target Start/End: Original strand, 4264770 - 4264874
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4264770 gccgccgtctcctgccccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacaatgttcctttttcaact 4264868  T
Q  637 caggta 642  Q
     |||||    
T  4264869 aaggta 4264874  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 4264440 - 4264503
Alignment:
Q  248 aaaagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  4264440 aaaagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 4264503  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 13823064 - 13823009
Alignment:
Q  256 agtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    |||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||    
T  13823064 agtgataggtataccaccataggtggcaatacaccttataccacccttatgtggca 13823009  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 13822820 - 13822777
Alignment:
Q  558 ttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  13822820 ttccgttcaaccctagccgcgcgtcgccgtctcctgctccatct 13822777  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 4264688 - 4264730
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 579  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  4264688 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 4264730  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 4264729 - 4264791
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||| ||||||    
T  4264729 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgccccatct 4264791  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 543 - 642
Target Start/End: Complemental strand, 22053002 - 22052902
Alignment:
Q  543 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 641  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22053002 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 22052903  T
Q  642 a 642  Q
    |    
T  22052902 a 22052902  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 577
Target Start/End: Complemental strand, 22053046 - 22053009
Alignment:
Q  540 gccgtctcctgctccatcttccgttcaaccctagccgc 577  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22053046 gccgtctcctgctccatcttccgttcaaccctagccgc 22053009  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 543 - 642
Target Start/End: Complemental strand, 44363387 - 44363287
Alignment:
Q  543 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 641  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44363387 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 44363288  T
Q  642 a 642  Q
    |    
T  44363287 a 44363287  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 577
Target Start/End: Complemental strand, 44363431 - 44363394
Alignment:
Q  540 gccgtctcctgctccatcttccgttcaaccctagccgc 577  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44363431 gccgtctcctgctccatcttccgttcaaccctagccgc 44363394  T

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Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 537 - 642
Target Start/End: Original strand, 41546347 - 41546451
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41546347 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 41546445  T
Q  637 caggta 642  Q
     |||||    
T  41546446 aaggta 41546451  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 41546039 - 41546098
Alignment:
Q  252 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  41546039 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 41546098  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 41546265 - 41546307
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 579  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  41546265 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 41546307  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 41546306 - 41546368
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||||||||||    
T  41546306 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgctccatct 41546368  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 12103200 - 12103249
Alignment:
Q  262 aggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    |||| |||||||||||||||||| ||| |||||||||| ||| |||||||    
T  12103200 aggtataccaccataggtggcaatacaccttataccacccttgtgtggca 12103249  T

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Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 537 - 642
Target Start/End: Original strand, 55039645 - 55039749
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55039645 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 55039743  T
Q  637 caggta 642  Q
     |||||    
T  55039744 aaggta 55039749  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 537 - 642
Target Start/End: Complemental strand, 14055965 - 14055862
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    ||||||||||| || |||||||||| |||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |    
T  14055965 gccgccgtctcttgttccatcttccattcaacgcaagc-gcgcgccgccgtcacctgctccatctccgacgatctctttcacagtgtt-ctttttcaagt 14055868  T
Q  637 caggta 642  Q
    ||||||    
T  14055867 caggta 14055862  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 55039335 - 55039396
Alignment:
Q  250 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  55039335 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 55039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 14056304 - 14056244
Alignment:
Q  251 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 311  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  14056304 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttgtgtggca 14056244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 578
Target Start/End: Complemental strand, 14056047 - 14056006
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 578  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14056047 gccgccgtctcctgctccatcttccgtccaaccctagccgcg 14056006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 579
Target Start/End: Original strand, 55039563 - 55039605
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 579  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  55039563 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 55039605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 55039604 - 55039666
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 601  Q
    ||||||||||  ||||||||||||| ||  ||||||||  |||||| ||||||||||||||||||    
T  55039604 gccgccgtcttatgctccatcttccattacaccctagc--cgcgccgccgtctcctgctccatct 55039666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 537 - 642
Target Start/End: Original strand, 86473 - 86577
Alignment:
Q  537 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 636  Q
    |||| ||||||||||| |||||||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  86473 gccgtcgtctcctgcttcatcttccgttcgaccctagca-cgcgccgccgtctcctgctctatctccgacgatctctttcacagtgttcctttttcaact 86571  T
Q  637 caggta 642  Q
    ||||||    
T  86572 caggta 86577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 1501266 - 1501218
Alignment:
Q  260 ataggtgtaccaccataggtggcaacacatcttataccactcttatgtg 308  Q
    |||||| |||||||||||||||||| ||| ||| |||||| ||||||||    
T  1501266 ataggtataccaccataggtggcaatacaccttctaccacccttatgtg 1501218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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