View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4699_high_12 (Length: 229)
Name: NF4699_high_12
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 18625801 - 18625960
Alignment:
| Q |
62 |
ttaattctttgattgatcatgcacagattatttaattaagacaaaaaagataagttagatgttgaatgattgaaatattagcatatattgtatttggtca |
161 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18625801 |
ttaattcttggattggtcatacacaaattatttaattaagacaaaa--gaaaacttagatgttgaatgattgaaatattagcatatatcgtatt-ggtca |
18625897 |
T |
|
| Q |
162 |
ataagtgattaattaacaagtcaagggtgtggtcaatcctaacacataattttagcaatataa |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18625898 |
ataagtgattaattaacatgtcaatggtgtggtaaatcctaacacataattttagcaatataa |
18625960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 15103984 - 15103893
Alignment:
| Q |
62 |
ttaattctttgattgatcatgcacagattatttaattaagacaaaaaagataagttagatgttgaatgattgaaatattagcatatattgtatt |
155 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15103984 |
ttaattcttggattggtcatacacaaattatttaattaagacaaaa--gaaaacttagatgttgaatgattgaaatattagcatatatcgtatt |
15103893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University