View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4699_high_13 (Length: 228)

Name: NF4699_high_13
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4699_high_13
NF4699_high_13
[»] chr2 (2 HSPs)
chr2 (7-109)||(44535975-44536077)
chr2 (156-228)||(44536124-44536196)
[»] chr1 (1 HSPs)
chr1 (158-206)||(22914600-22914648)
[»] chr5 (2 HSPs)
chr5 (16-89)||(24872170-24872243)
chr5 (17-97)||(25746355-25746435)
[»] chr6 (1 HSPs)
chr6 (17-97)||(7587770-7587850)
[»] chr4 (1 HSPs)
chr4 (17-97)||(50302946-50303026)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 44535975 - 44536077
Alignment:
Q  7 gtatttcgttgtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaaacattcattcacaaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44535975 gtatttcgttgtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaaacattcattcacaaatt 44536074  T
Q  107 act 109  Q
    |||    
T  44536075 act 44536077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 44536124 - 44536196
Alignment:
Q  156 cgggttgcgcgtgggtgagaattggaagggatatatccaaattaaataaaatttaggcaatatcacacaatta 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  44536124 cgggttgcgcgtgggtgagaattggaagggatatatccaaattaaataaaatttaggcaatattgcacaatta 44536196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 22914600 - 22914648
Alignment:
Q  158 ggttgcgcgtgggtgagaattggaagggatatatccaaattaaataaaa 206  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  22914600 ggttgcgcatggatgaggattggaagggatatatccaaattaaataaaa 22914648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 24872170 - 24872243
Alignment:
Q  16 tgtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaa 89  Q
    |||||||||||||| |||||| ||   || ||||||||| |||||||| ||||| |||| ||||||||||||||    
T  24872170 tgtgtttctttctttcaatttgtgaaaaaataagaaaaataaaatatagattcaatctgaaaaattattctgaa 24872243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 25746355 - 25746435
Alignment:
Q  17 gtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaaacattcat 97  Q
    |||||||||| ||||||||| ||  ||| |  ||| || |||||||||||||| | || |||||||||||||||| |||||    
T  25746355 gtgtttcttttttccaatttgtgaagaaattggaataataaaatataaattcaatatgtaaaattattctgaaactttcat 25746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 7587770 - 7587850
Alignment:
Q  17 gtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaaacattcat 97  Q
    ||||||| |||||||||||| ||  ||| | |||| || |||||||||||||| | || |||||||||||||||| |||||    
T  7587770 gtgtttccttcttccaatttgtgaagaaatcagaataataaaatataaattcaatatgtaaaattattctgaaactttcat 7587850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 50302946 - 50303026
Alignment:
Q  17 gtgtttctttcttccaatttatgttgaactaagaaaaagaaaatataaattcattctggaaaattattctgaaacattcat 97  Q
    |||||||||||||||||||| ||  ||| |  ||| || |||||||||||||| | || |||||||||||||||| |||||    
T  50302946 gtgtttctttcttccaatttgtgaagaaatcggaataataaaatataaattcaatatgtaaaattattctgaaactttcat 50303026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University