View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699_high_5 (Length: 360)
Name: NF4699_high_5
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_high_5 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 14786371 - 14786713
Alignment:
| Q |
5 |
cacttgtttaaaaaatttaaaaggaaactgtacattgaaaataacaaattttaattcttctaaaaagttgattacatatatttcaatgaaataatactaa |
104 |
Q |
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| T |
14786371 |
cacttgtttaaaaattttaaaaggaaactgtacattgaaaataacaaattttaattcttttaaaaagttgattacatatatttcaatgaaataatactaa |
14786470 |
T |
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| Q |
105 |
tgttgattctttaacaaatgtactacttagcatttttctaatttgtttctaatgtggtgcagaactcatacaacaatcctataaatggaaatcgaaagtt |
204 |
Q |
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| T |
14786471 |
tgttgattctttaacaaatgtactacttaggatttttctaatttgtttttaatgtggtgcagaactcatacaacaatcctataaatggaaatcgaaagtt |
14786570 |
T |
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| Q |
205 |
acgtgcagtagctacaactgttagtggtgacaaggttaattttttcagagttggtttttatggctatcaagacacattgtatgatgccaatggaagacac |
304 |
Q |
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| T |
14786571 |
acgtgctgtagctacaactgttagtggtgacaaggttaattttttcagagttgctttttatggctatcaagacacactgtatgatgcaaatggaagacac |
14786670 |
T |
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| Q |
305 |
tactacaaactttgcaccatacaaggtgctgtagattttatct |
347 |
Q |
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| T |
14786671 |
tactacaaactttgtaccatacaaggtgctgtagattttatct |
14786713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 14773285 - 14773389
Alignment:
| Q |
243 |
attttttcagagttggtttttatggctatcaagacacattgtatgatgccaatggaagacactactacaaactttgcaccatacaaggtgctgtagattt |
342 |
Q |
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| T |
14773285 |
atttttttagggttggtttctttggttatcaagacactttgtgggacaacaatggaagacactactacaagctttgtaccatacaaggtgctatagattt |
14773384 |
T |
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| Q |
343 |
tatct |
347 |
Q |
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||||| |
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| T |
14773385 |
tatct |
14773389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 11541 - 11886
Alignment:
| Q |
5 |
cacttgtttaaaaaatttaaaaggaaactgtacattgaaaataacaaattttaattcttctaaaa-agttgattacatatatttcaatgaaataatacta |
103 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
11541 |
cacttgtttaaaaattttaaaaggaaactgtacattgaaaataacaaattttaattcttttaaaaaagttgattacatatatttcaatgaaataatacta |
11640 |
T |
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| Q |
104 |
atgttgattctttaacaaatgtactacttagcatttttctaatttgtttctaatgtggtgcagaactcatacaacaatcctataaatggaaatcgaaagt |
203 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641 |
atgttgattctttaacaaatgtactacttaggatttttctaatttgtttttaatgtggtgcagaactcatacaacaatcctataaatggaaatcgaaagt |
11740 |
T |
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| Q |
204 |
tacgtgcagtagctacaactgttagtggtgacaaggttaa-ttttttcagagttg-gtttttatggctatcaagacacattgtatgatgccaatggaaga |
301 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
11741 |
tacgtgctgtagctacaactgttagtggtgacaaggttaatttttttcagagttgcttttttatggctatcaagacacactgtatgatgcaaatggaaga |
11840 |
T |
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| Q |
302 |
cactactacaaactttgcaccatacaaggtgctgtagattttatct |
347 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11841 |
cactactacaaactttgtaccatacaaggtgctgtagattttatct |
11886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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