View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4699_high_6 (Length: 313)

Name: NF4699_high_6
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4699_high_6
NF4699_high_6
[»] chr3 (23 HSPs)
chr3 (20-306)||(2748931-2749217)
chr3 (20-298)||(5412830-5413108)
chr3 (20-298)||(2807211-2807489)
chr3 (20-291)||(2838516-2838787)
chr3 (20-299)||(2855726-2856005)
chr3 (31-279)||(2818520-2818768)
chr3 (31-297)||(2759159-2759425)
chr3 (31-291)||(2769020-2769280)
chr3 (34-279)||(2797324-2797569)
chr3 (118-279)||(2790330-2790491)
chr3 (97-158)||(21945673-21945734)
chr3 (116-173)||(22648533-22648590)
chr3 (97-173)||(21930455-21930531)
chr3 (97-173)||(22028034-22028110)
chr3 (97-173)||(22034551-22034627)
chr3 (97-173)||(22179451-22179527)
chr3 (41-173)||(22657366-22657498)
chr3 (97-155)||(22104775-22104833)
chr3 (97-155)||(22187040-22187098)
chr3 (41-155)||(22615559-22615673)
chr3 (97-154)||(22052786-22052843)
chr3 (91-155)||(22208072-22208136)
chr3 (115-155)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (31-305)||(6079-6353)
[»] chr8 (1 HSPs)
chr8 (97-155)||(27294600-27294658)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 2749217 - 2748931
Alignment:
Q  20 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749217 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 2749118  T
Q  120 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  2749117 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggact 2749018  T
Q  220 tcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgcta 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2749017 tcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctcctatgcta 2748931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 5413108 - 5412830
Alignment:
Q  20 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 119  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5413108 ttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaaaaactagcttggc 5413009  T
Q  120 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggacct 219  Q
    ||||||||||||||||||||| |||||||||||||| ||||| || || || || ||| |||||||||||||||||||||||| ||||||||||||||||    
T  5413008 aagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggacct 5412909  T
Q  220 tcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctc 298  Q
    |||||||| |||||||||||||||  ||| || || ||||||||||||||||| |||||| ||||||||||| ||||||    
T  5412908 tcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctc 5412830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 2807489 - 2807211
Alignment:
Q  20 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 119  Q
    |||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||| || |||| ||| ||| |||||||||||||||||    
T  2807489 ttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggc 2807390  T
Q  120 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggacct 219  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||   |    
T  2807389 aagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaat 2807290  T
Q  220 tcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctc 298  Q
    |||| ||| |||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  2807289 tcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctc 2807211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 2838516 - 2838787
Alignment:
Q  20 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||| |||||||| |||||||||||||||||||||    
T  2838516 ttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaactagcttggc 2838615  T
Q  120 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggacct 219  Q
    |||||||||||||||||| || |||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||| | | ||||||| |||| |||    
T  2838616 aagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggcct 2838715  T
Q  220 tcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttct 291  Q
    |||| ||| |||| ||||||||||||||| ||||| |||||||||||||| ||  ||||| |||||||||||    
T  2838716 tcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttct 2838787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 2855726 - 2856005
Alignment:
Q  20 ttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggc 119  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || || |||||||| ||| ||||||| |||||||||    
T  2855726 ttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaaaaattagcttggc 2855825  T
Q  120 aagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggacct 219  Q
    |||||| ||||||||||  || |||||||| ||||| || |||||  ||||||||| |  ||| ||||||||||||||||||| |||||||||||| |||    
T  2855826 aagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggcct 2855925  T
Q  220 tcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcc 299  Q
    ||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  2855926 tcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctcc 2856005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 2818768 - 2818520
Alignment:
Q  31 cctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggttt 130  Q
    |||||||||||||| ||||||||||||  || |||||| ||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||||||||    
T  2818768 cctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttt 2818669  T
Q  131 ttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggaccttcaattccaac 230  Q
    ||||||| || |||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||| | ||||||||| | || ||||||| ||| ||    
T  2818668 ttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctac 2818569  T
Q  231 aacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat 279  Q
     | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2818568 gatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccat 2818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 297
Target Start/End: Complemental strand, 2759425 - 2759159
Alignment:
Q  31 cctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggttt 130  Q
    |||||||||||||| ||||||||||||  || ||||||  |||||||||| |||| || |||||||| ||| ||||||||||||||||||||||||||||    
T  2759425 cctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttt 2759326  T
Q  131 ttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggaccttcaattccaac 230  Q
    | || || || |||||||||||||| || ||||| ||||| ||||||  ||| ||||||||||||||| | |||||||||||||| ||||||| ||| ||    
T  2759325 tgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctac 2759226  T
Q  231 aacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctct 297  Q
    || ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  2759225 aatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctct 2759159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 2769280 - 2769020
Alignment:
Q  31 cctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggttt 130  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||| ||| ||||||| ||||||||||||||||    
T  2769280 cctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcataaactagtttggcaagagtggttt 2769181  T
Q  131 ttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggaccttcaattccaac 230  Q
    ||||||| || |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||| | | ||||||| |||| ||||| | ||| ||    
T  2769180 ttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttgggccttccaatcctac 2769081  T
Q  231 aacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttct 291  Q
    || |||||||||||||||||| || |||||||  ||||||||||||||| ||||| |||||    
T  2769080 aatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttct 2769020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 2797569 - 2797324
Alignment:
Q  34 ctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttc 133  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||| | || || ||||||||  || || ||||||||||||||||||||||||||||    
T  2797569 ctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttc 2797470  T
Q  134 ctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggaccttcaattccaacaac 233  Q
    |||| ||||||||||| ||||| || ||||| ||||||||||||   || || | |||||||||||||| ||||||  | || ||||||| ||| ||||     
T  2797469 ctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaat 2797370  T
Q  234 ttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat 279  Q
    | | ||||||||||||||||| ||||||||||||||||||| ||||    
T  2797369 tgcagtttcttcaataaaaagggaagacagtcgaggatcacaccat 2797324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 2790491 - 2790330
Alignment:
Q  118 gcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggac 217  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||   || ||||||||||||||||||| ||||||  | || |    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  218 cttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat 279  Q
    |||||| ||| |||| | | ||||||||||| ||||| |||||||  ||||||||| |||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccat 2790330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 21945734 - 21945673
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacgga 158  Q
    ||||| |||||||||  |||||| ||||||||||||||| | ||||||||||||||||||||    
T  21945734 ttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacgga 21945673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
Q  116 tggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 173  Q
    |||||||||||||||||||||| |||||||| |||||||| || || || ||||||||    
T  22648533 tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc 22648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 21930531 - 21930455
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 173  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  21930531 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 21930455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 22028110 - 22028034
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 173  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22028110 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 22034627 - 22034551
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 173  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22034627 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22034551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 22179527 - 22179451
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 173  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | ||||||||||| |||||| ||| ||| ||||||||    
T  22179527 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctc 22179451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 22657366 - 22657498
Alignment:
Q  41 tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc 140  Q
    |||||||||| || |||||||  ||| ||||||| ||||||||| |    |||| |||||| |||||||||   || |||||||| ||||||||| | ||    
T  22657366 tgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccc 22657465  T
Q  141 tcccattcctaccacggatatcaccgtgcgctc 173  Q
    ||||||||| || || ||||| || ||||||||    
T  22657466 tcccattcccacgacagatatgacagtgcgctc 22657498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 22104833 - 22104775
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 155  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  22104833 ttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccac 22104775  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 22187098 - 22187040
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 155  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  22187098 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac 22187040  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 22615559 - 22615673
Alignment:
Q  41 tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc 140  Q
    |||| |||||||| |||||||  ||  ||||||||||||||||| |  | ||||  ||||| ||||||||   |||||||||||||||||| ||  | ||    
T  22615559 tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc 22615658  T
Q  141 tcccattcctaccac 155  Q
    ||||||||| |||||    
T  22615659 tcccattcccaccac 22615673  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 22052843 - 22052786
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctacca 154  Q
    ||||| |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||    
T  22052843 ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctacca 22052786  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 22208136 - 22208072
Alignment:
Q  91 acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 155  Q
    |||| |||||| ||||||||| ||||||||||||| ||||| ||| | |||||||| || |||||    
T  22208136 acctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccac 22208072  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
Q  115 ttggcaagagtggtttttcctaggcctcccattcctaccac 155  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  22621288 ttggcaagagtggattttccttgtcctcccattcctaccac 22621328  T

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Target: scaffold0691 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 6079 - 6353
Alignment:
Q  31 cctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggttt 130  Q
    |||||||| ||||| | ||||||||||| || |||||||||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||||||||    
T  6079 cctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttt 6178  T
Q  131 ttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggaccttcaattccaac 230  Q
    | ||||  ||||||||||||||||| || || || ||||||||||||  ||  ||||||||||||||| | | ||| ||| |||| ||||| | ||| ||    
T  6179 tccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctac 6278  T
Q  231 aacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgct 305  Q
    |||||| ||||||||||||||||| | ||| | |||||||||||||||| |||||||||||  ||||||| ||||    
T  6279 aacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgct 6353  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 27294658 - 27294600
Alignment:
Q  97 ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 155  Q
    ||||| |||||||||  |||| | ||||||||||||||| | |||||||||||||||||    
T  27294658 ttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccac 27294600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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