View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699_low_15 (Length: 227)
Name: NF4699_low_15
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_low_15 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38743715 - 38743489
Alignment:
| Q |
1 |
tttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743715 |
tttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
38743616 |
T |
|
| Q |
101 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagcaagttgaggtatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
38743615 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgacgtgtttga |
38743516 |
T |
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| Q |
201 |
taacgatggttggtgggtaggggaaat |
227 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
38743515 |
taacgatggttggtgggtagggaaaat |
38743489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38788692 - 38788918
Alignment:
| Q |
1 |
tttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38788692 |
tttgtaggttcgtactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
38788791 |
T |
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| Q |
101 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagcaagttgaggtatttga |
200 |
Q |
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| T |
38788792 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcataatccttggaggtttgaactcaatcagaaagttgatgtgtttga |
38788891 |
T |
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| Q |
201 |
taacgatggttggtgggtaggggaaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38788892 |
taacgatggttggtgggtaggggaaat |
38788918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38782520 - 38782740
Alignment:
| Q |
1 |
tttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38782520 |
tttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaac |
38782619 |
T |
|
| Q |
101 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagcaagttgaggtatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||| |||||||||| ||||||| |||||||| |
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| T |
38782620 |
ttcttatggaaacactttttccaaaagatcttcgtccaataccaccacatgttcgtaatcctttgaagtttaaactcaatcaaaaagttgatgtatttga |
38782719 |
T |
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| Q |
201 |
taacgatggttggtgggtagg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38782720 |
taacgatggttggtgggtagg |
38782740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30963131 - 30962905
Alignment:
| Q |
1 |
tttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaac |
100 |
Q |
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|||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
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| T |
30963131 |
tttgtaggttcatattttgaagccacaattgtttcatgccttgagagtggaaaatatgtgattcgttacaagaatcttcttaaagacgacgaatctcaac |
30963032 |
T |
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| Q |
101 |
ttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagcaagttgaggtatttga |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| | |||| |||||||||| ||||||| || ||| | |
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| T |
30963031 |
ttcttatggaaacacttttatcaaaagatcttcgtccatcacagccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttgatgtttttta |
30962932 |
T |
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| Q |
201 |
taacgatggttggtgggtaggggaaat |
227 |
Q |
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||| |||||||||||||||||| |||| |
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| T |
30962931 |
taaagatggttggtgggtagggaaaat |
30962905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 2914702 - 2914862
Alignment:
| Q |
67 |
tacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcga |
166 |
Q |
| |
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|||||||| |||||||||||||| || || |||||||| | ||| | |||||||| |||||||||| ||| | |||||||||| ||||||| ||||| | |
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| T |
2914702 |
tacaagaaccttcttaaagatgatgagtctgaacttctcacggagatactttttctaaaagatctttgtctagtaccaccacgagttcgtaggccttcta |
2914801 |
T |
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| Q |
167 |
ggtttgaactcaatcagcaagttgaggtatttgataacgatggttggtgggtaggggaaat |
227 |
Q |
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||| ||||||| ||| ||||| | || ||||| |||||||| |||||| |||| ||||| |
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| T |
2914802 |
agttcaaactcaaccagaaagtttatgtttttgacaacgatgggtggtggataggagaaat |
2914862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 5963594 - 5963497
Alignment:
| Q |
130 |
cttcgtccattaccaccacgtgttcgtaatccttcgag-gtttgaactcaatcagcaagttgaggtatttgataacgatggttggtgggtaggggaaat |
227 |
Q |
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|||||||||||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| | ||||| ||||||||||||||| ||||| |||| |
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| T |
5963594 |
cttcgtccattaccgccacgtgttcgtagtcc-tcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaat |
5963497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5963724 - 5963684
Alignment:
| Q |
1 |
tttgtaggttcatactttgaagctacaattgtttcatgtct |
41 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
5963724 |
tttgtgggttcatactttgaagctacaattgtttcgtgtct |
5963684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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