View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699_low_16 (Length: 215)
Name: NF4699_low_16
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6982356 - 6982559
Alignment:
| Q |
1 |
atttcctgaaaaattaccattgaacgttgaaaccatcgcaacactaaaatggatcgattcttgaaccaaaactat----ggttactttatacacattaca |
96 |
Q |
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| T |
6982356 |
atttcctgaaaaattaccattgaacgttgaaaccatcgcaacactaaaatggatcgattcttgaaccaaaactatatatggttactttatacacattaca |
6982455 |
T |
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| Q |
97 |
tcaagtgctactcccacttttaattgtttttataactttcaaactaacttgtttgcaatgcaagtaaactagtaaactaatctagcataaattaatatct |
196 |
Q |
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| T |
6982456 |
tcaagtgctactcccacttttaattgtttttataactttcaaactaacttgtttgcaatgcaagtaaactagtaaactaatctagcataaattaatatct |
6982555 |
T |
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| Q |
197 |
tcat |
200 |
Q |
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|||| |
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| T |
6982556 |
tcat |
6982559 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 42741560 - 42741626
Alignment:
| Q |
114 |
ttttaattgtttttataactttcaaactaacttgtttgcaatgcaagtaaactagtaaactaatcta |
180 |
Q |
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|||||| | ||||| |||||||| |||||||||| |||||| ||||||||| | |||||||||||| |
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| T |
42741560 |
ttttaactatttttctaactttctaactaacttgcttgcaaagcaagtaaaacactaaactaatcta |
42741626 |
T |
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