View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699_low_2 (Length: 722)
Name: NF4699_low_2
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 634; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 708
Target Start/End: Complemental strand, 8653618 - 8652900
Alignment:
| Q |
1 |
acataacgaagaaagaacggcgtaagatagcacaagagattgagtttaatagtaaagttatgaagaagaaaagagggttgattcctttgagggatatgga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653618 |
acataacgaagaaagaacggcgtaagatagcacaagagattgagtttaatagtaaagttatgaagaagaaaagagggttgattcctttgagggatatgga |
8653519 |
T |
|
| Q |
101 |
tttgaatgagtataaagcttataaagaagctaaattggctcagatgaagcctttagttcttgataaggtttttgctgagaaagaggatgatgaagaagaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653518 |
tttgaatgagtataaggcttataaagaagctaaattggctcagatgaagcctttagttcttgataaggtttttgctgagaaagaggatgatgaagaagaa |
8653419 |
T |
|
| Q |
201 |
ggtgggttgagtgatgggtctggtgatgagagggtagtgcctaggaatcctagatgggctgtttatgggcgaggtttcgaggatgttaatgagtttttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653418 |
ggtgggttgagtgatgggtctggtgatgagagggtagtgcctaggaatcctagatgggctgtttatgggcgaggtttcgaggatgttaatgagtttttga |
8653319 |
T |
|
| Q |
301 |
atagtgagagttatgaccctgc---tgctatgaaaactggaggtaattggtatttacaatctgttttggttttattt---------ctgttgaggattat |
388 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8653318 |
atagtgagagttatgaccctgctgctgctatgaaaactggaggtaattggtatttacaatctgttttggttttatttctgttgatgctgttgaggattat |
8653219 |
T |
|
| Q |
389 |
tatgacctatgtaacaacttttagtctctagattgaacgtgtgccaggtgcgcctgacacgtaatggtgttagacacaaacacatgtagttatgtgtcag |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653218 |
tatgacctatgtaacaacttttagtctctagattgaatgtgtgccaggtgcgcctgacacgtaatggtgttagacacaaacacatgtagttatgtgtcag |
8653119 |
T |
|
| Q |
489 |
tgtcggatgtctaacatgtattggtgtcagacacatacatgtagtttacctttggtatctacatgtcagtgtcatatctggtatatgtatctgtattgct |
588 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
8653118 |
tgtcgggtgtctgacatgtattggtgtcagacacatacatgtag-ttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgtattgct |
8653020 |
T |
|
| Q |
589 |
gcttcatagattattgtgtaggatgccgttccggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgt |
688 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653019 |
gcttcatagattattgtgtaggatgccgttccggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgt |
8652920 |
T |
|
| Q |
689 |
catatccggtatatgtgtct |
708 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
8652919 |
catatccggtatatgtgtct |
8652900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 223 - 480
Target Start/End: Original strand, 9172817 - 9173083
Alignment:
| Q |
223 |
gtgatgagagggtagtgcctaggaatcctagatgggctgtttatgggcgaggtttcgaggatgttaatgagtttttgaatagtgagagttatgaccctgc |
322 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||| ||| || ||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
9172817 |
gtgatgagagggtagaggctaggaatcctaggtgggctgtttatgggaaagggttggaggatgttaaggagtttttgaacagtgagagttatgatcctgc |
9172916 |
T |
|
| Q |
323 |
tgctatgaaaactggaggtaattggtatttacaatctgttttggttttatttctgtt---------gaggattattatgacctatgtaacaacttttagt |
413 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||| |||| |
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| T |
9172917 |
tgctaagaaaattggaggtaattggtatttacaatctgttttggttttatttttgttaatgttgtcgaggattattgtgacctatgtaataacttctagt |
9173016 |
T |
|
| Q |
414 |
ctctagattgaacgtgtgccaggtgcgcctgacacgtaatggtgttagacacaaacacatgtagtta |
480 |
Q |
| |
|
|||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |
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| T |
9173017 |
ctctagattgaaggcgtgtcaggtgcccctgacacacaatggtgttagacacaaacacacgtagtta |
9173083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 507 - 716
Target Start/End: Original strand, 9173170 - 9173380
Alignment:
| Q |
507 |
tattggtgtcagacacataca--tgtagtttacctttggtatctacatgtcagtgtcatatctggtatatgtatctgtattgctgcttcatagattattg |
604 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |
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| T |
9173170 |
tattggtgttagacacatacacatgtagtt-acctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattgctgcttcatatattattg |
9173268 |
T |
|
| Q |
605 |
tgtaggatgccgttccggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccggtatatgt |
704 |
Q |
| |
|
| |||| |||||||| ||||||||||| ||| |||| |||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9173269 |
tttagggtgccgttcatgtgcctgacacatatctgtgccagacataggcgcatgtagttacgtttggtttctatgtgtcaatgtcatatccggtatatgt |
9173368 |
T |
|
| Q |
705 |
gtctgtgctgct |
716 |
Q |
| |
|
||| ||| |||| |
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|
| T |
9173369 |
gtccgtgttgct |
9173380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 9172607 - 9172764
Alignment:
| Q |
13 |
aagaacggcgtaagatagcacaagagattgagtttaatagtaaagttatgaagaagaaaagagggttgattcctttgagggatatggatttgaatgagta |
112 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||| |||| ||| ||||| |
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|
| T |
9172607 |
aagaacggcgtaagatagctcaagagtttgagtttaatagtaattttatgaagaagaaaagtgggttggttcatttgagggatattgattcgaacgagta |
9172706 |
T |
|
| Q |
113 |
taaagcttataaagaagctaaattggctcagatgaagcctttagttcttgataaggtt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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|
| T |
9172707 |
taaagcttataaagaagctaaattggctcagttgacgcctttggttcttgataaggtt |
9172764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 621 - 710
Target Start/End: Complemental strand, 8653113 - 8653026
Alignment:
| Q |
621 |
ggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccggtatatgtgtctgt |
710 |
Q |
| |
|
|||| |||||| ||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||| |
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| T |
8653113 |
ggtgtctgacatgtattggtgtcagacacat--acatgtagttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgt |
8653026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9172505 - 9172561
Alignment:
| Q |
1 |
acataacgaagaaagaacggcgtaagatagcacaagagattgagtttaatagtaaag |
57 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
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|
| T |
9172505 |
acataacgaagaaagaacagcctaagatagctcaagagattgagtttaatagtaaag |
9172561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 621 - 701
Target Start/End: Original strand, 9173157 - 9173237
Alignment:
| Q |
621 |
ggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccggtata |
701 |
Q |
| |
|
|||| ||||||| |||| |||| ||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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|
| T |
9173157 |
ggtgtctgacacatattggtgttagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtata |
9173237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 602
Target Start/End: Complemental strand, 8652975 - 8652878
Alignment:
| Q |
506 |
gtattggtgtcagacacat--acatgtagtttacctttggtatctacatgtcagtgtcatatctggtatatgtatctgtattgctgcttcatagattat |
602 |
Q |
| |
|
||||| |||||||||||| |||||||||| || |||||| |||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||||| |
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|
| T |
8652975 |
gtatttgtgtcagacacaagcacatgtagtt-acgtttggtttctatgtgtcagtgtcatatccggtatatgtgtctttgttgctgcttcatagattat |
8652878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 9172562 - 9172606
Alignment:
| Q |
13 |
aagaacggcgtaagatagcacaagagattgagtttaatagtaaag |
57 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
9172562 |
aagaacggcgtaagatagctcaagagtttgagtttaatagtaaag |
9172606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 602
Target Start/End: Original strand, 9173326 - 9173394
Alignment:
| Q |
534 |
ttacctttggtatctacatgtcagtgtcatatctggtatatgtatctgtattgctgcttcatagattat |
602 |
Q |
| |
|
|||| |||||| |||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||| |
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|
| T |
9173326 |
ttacgtttggtttctatgtgtcaatgtcatatccggtatatgtgtccgtgttgctgcttcatagattat |
9173394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 696
Target Start/End: Original strand, 9173058 - 9173115
Alignment:
| Q |
639 |
gtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccg |
696 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||| |||||| ||| ||||| |||||| |
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|
| T |
9173058 |
gtgttagacacaaacacacgtagttacgtttggtatctatgcgtcggtgtcgtatccg |
9173115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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