View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4699_low_4 (Length: 520)
Name: NF4699_low_4
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4699_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 39536602 - 39536818
Alignment:
| Q |
17 |
aagagctgaacgtgcctcactagtaatgaatacaggatcatgatatacctgctgcagaaaacggatttgcaccaattcgatgttgatttgcagggcacac |
116 |
Q |
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| T |
39536602 |
aagagctgaacgtgcctcactagtaatgaatgcaggatcatgatatacctgctgcagaaaacggatttgcaccaattcgatgttgatttgcagggcacac |
39536701 |
T |
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| Q |
117 |
atcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtatttacttgtagatcaaaatagaggtagtcaag |
216 |
Q |
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| T |
39536702 |
atcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtatttacttgtagatcaaaatagaggtagtcaag |
39536801 |
T |
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| Q |
217 |
tatggatagtcgattat |
233 |
Q |
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| T |
39536802 |
tatggatagtcgattat |
39536818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 230 - 369
Target Start/End: Original strand, 39536863 - 39537002
Alignment:
| Q |
230 |
ttatcacaagactcttgtcaataattactcaaagtcttttacatattgtatgtttatcgttcaacaaagcttttaatttggttgactctctaaacatcta |
329 |
Q |
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| T |
39536863 |
ttatcacaagactcttgtcaataattactcaaagtcttttacatattttatgtttatcgttcaacaaagcttttaatttggttgactctctaaacatcta |
39536962 |
T |
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| Q |
330 |
tcctcaacactatctttaggtttggatgactaatctaata |
369 |
Q |
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| T |
39536963 |
tcctcaacactatctttaggtttggatgactaatctaata |
39537002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 416 - 504
Target Start/End: Original strand, 39537049 - 39537137
Alignment:
| Q |
416 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtcaaagaacccttgttcat |
504 |
Q |
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| T |
39537049 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtgaaagaacccttgttcat |
39537137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 2362093 - 2362200
Alignment:
| Q |
109 |
gggcacacatcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtatttacttgtagatcaaaatagagg |
208 |
Q |
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|||| |||||||| |||||||||||| |||| | || ||||||||| ||| ||| |||||||||||| |||| |||||| |||||||| | | ||||||| |
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| T |
2362093 |
gggctcacatcaggtcaatcaagctactgtttgcagaactggttctgtaatgcagattgaaggtatatatcaagtattttcttgtagagc-acatagagg |
2362191 |
T |
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| Q |
209 |
tagtcaagt |
217 |
Q |
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|||| |||| |
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| T |
2362192 |
tagttaagt |
2362200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 2364350 - 2364418
Alignment:
| Q |
116 |
catcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgta |
184 |
Q |
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| T |
2364350 |
catcaggtcaatcaagcaagtgttagaagaactggttctgtgtagcagattgaaggtataaatcatgta |
2364418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 2489796 - 2489699
Alignment:
| Q |
126 |
atcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtat-ttacttgtagatcaaaatagaggtagtcaagtatggat |
223 |
Q |
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| T |
2489796 |
atcaagcttgtgttaaaagaactgattctgtgaagcagattgaaggtataaatcatatatattttttgtagaac-aaacagaggtagtcaagtaaggat |
2489699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 2544053 - 2543996
Alignment:
| Q |
168 |
aaggtataaatcatgtatttacttgtagatcaaaatagaggtagtcaagtatggatagt |
226 |
Q |
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| T |
2544053 |
aaggtataaatcatgtattttcttatagaac-aagtagaggtagtcaagtatgggtagt |
2543996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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