View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4699_low_8 (Length: 279)

Name: NF4699_low_8
Description: NF4699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4699_low_8
NF4699_low_8
[»] chr3 (11 HSPs)
chr3 (13-279)||(2748688-2748954)
chr3 (13-229)||(5412597-5412813)
chr3 (13-231)||(2797051-2797269)
chr3 (13-234)||(2856037-2856258)
chr3 (13-254)||(2768759-2769000)
chr3 (13-231)||(2790048-2790275)
chr3 (13-254)||(2838810-2839048)
chr3 (13-241)||(2818247-2818475)
chr3 (17-279)||(2806955-2807226)
chr3 (13-254)||(2758904-2759145)
chr3 (13-61)||(2755734-2755782)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-236)||(6377-6596)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 2748688 - 2748954
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  2748688 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagatt 2748787  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748788 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 2748887  T
Q  213 ataactttcaaatttcacacgaacgaggaacttcaagcagcattagcataggagagagagaaaatgg 279  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2748888 ataactttcaaatttcacacgaacaaggaacttcaagcagcattagcataggagagagagaaaatgg 2748954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 5412597 - 5412813
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||| | ||||  ||||||||||| ||||||||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt 5412696  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
    |||||    ||||||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  5412697 gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggt 5412796  T
Q  213 ataactttcaaatttca 229  Q
    |||||||||||||||||    
T  5412797 ataactttcaaatttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 2797051 - 2797269
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||  |||| |||||||||||| ||||||||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt 2797150  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
    ||||| | ||||||||| |||||| ||| ||| || ||||||||||| ||| || |||||||  ||||||||||||||||||||||||||||||||||||    
T  2797151 gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggt 2797250  T
Q  213 ataactttcaaatttcaca 231  Q
    |||||||||||||||||||    
T  2797251 ataactttcaaatttcaca 2797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 2856258 - 2856037
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||| | || ||||||||||||||  |||| ||    
T  2856258 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggtt 2856159  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
     |||| | |||||||||||||||||||| |||| | || ||||| || ||||||||||| || || ||||||||||||||||||||||||||  ||||||    
T  2856158 acaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggt 2856059  T
Q  213 ataactttcaaatttcacacga 234  Q
    ||||||||||||||||||||||    
T  2856058 ataactttcaaatttcacacga 2856037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 2768759 - 2769000
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||| |||||| ||| ||| | ||||||||| ||  |||||||    
T  2768759 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagatt 2768858  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
    ||||| | |||||||||||||| |||||||||| | || ||||  || |||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  2768859 gcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2768958  T
Q  213 ataactttcaaatttcacacgaacgaggaacttcaagcagca 254  Q
    ||| |||||||| |||||| |||| |||| | |||| |||||    
T  2768959 atagctttcaaacttcacatgaacaaggatcctcaaacagca 2769000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 2790048 - 2790275
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggac------caatcctcctagatgtgg---atctttagtc 103  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |      ||||||| || ||||  |   ||||||| ||    
T  2790048 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattc 2790147  T
Q  104 ggcaagattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaa 203  Q
     ||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| ||| |  |||||||  |||||||||||||||||||||||||||    
T  2790148 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaa 2790247  T
Q  204 gtgagaggtataactttcaaatttcaca 231  Q
    ||||||||||||||||||||||||||||    
T  2790248 gtgagaggtataactttcaaatttcaca 2790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 2839048 - 2838810
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||  ||||||||    ||| || |    
T  2839048 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatcttta---tgcatgact 2838952  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
     |||||  ||||||||||||||||||||||||  | || ||||| || ||||| ||||| ||  |  ||| ||  ||||||||| ||||||| |||||||    
T  2838951 ccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggt 2838852  T
Q  213 ataactttcaaatttcacacgaacgaggaacttcaagcagca 254  Q
    ||||||||||||||||| | |||| |||| | ||||||||||    
T  2838851 ataactttcaaatttcaaatgaacaaggatcctcaagcagca 2838810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 2818247 - 2818475
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||   | || |||||||||||| ||||  ||||  ||||||| ||  ||||||||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt 2818346  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
     ||||   ||| || ||||||| ||||||| || | || ||||| || ||||||||||| || || |||||||||||||||||||||||||| |||||||    
T  2818347 ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2818446  T
Q  213 ataactttcaaatttcacacgaacgagga 241  Q
    ||||||| |||||||| || |||| ||||    
T  2818447 ataacttccaaatttcgcatgaacaagga 2818475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 2806955 - 2807226
Alignment:
Q  17 gaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaa------tcctcctagatg---tggatctttagtcggca 107  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||| ||||||| | | ||      ||||||| ||||   |||||||| | ||  ||    
T  2806955 gaagcatcatttcgcattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctaca 2807054  T
Q  108 agattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtga 207  Q
    |||||||||| |   ||||||||||||||||||||||||||||||||||| | || |  ||||||||  | ||  |||| ||||||||||||||||||||    
T  2807055 agattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtga 2807154  T
Q  208 gaggtataactttcaaatttcacacgaacgaggaacttcaagcagcattagcataggagagagagaaaatgg 279  Q
    |||||||||||| ||||||||||| |||| |||| | |||||| |||  ||||   |||||| |||||||||    
T  2807155 gaggtataacttacaaatttcacatgaacaaggatcatcaagccgcaacagcactagagagacagaaaatgg 2807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 2758904 - 2759145
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagatt 112  Q
    |||||||||||| ||||||||||||||| | ||||| |||||||||||||| || |||| | ||||||||||| |  | |||||| || ||  |||||||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt 2759003  T
Q  113 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 212  Q
     |||| | ||||||||||||||||||||||||  | || ||||| || ||||| ||||| ||  |  ||||||  ||||||||||||||||| | |||||    
T  2759004 acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggt 2759103  T
Q  213 ataactttcaaatttcacacgaacgaggaacttcaagcagca 254  Q
    ||||||||||||||||| | |||| |||| | |||| |||||    
T  2759104 ataactttcaaatttcaaatgaacaaggatcctcaaacagca 2759145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 2755734 - 2755782
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 6596 - 6377
Alignment:
Q  17 gaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaa 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||| |||| ||||| |||||| ||||||||| ||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa 6497  T
Q  117 ggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataa 216  Q
    | | |||||||||||||||| | |  ||||| ||||||||||| ||||||||||| ||  | |||||||||||||||||||| |||||||| ||||||||    
T  6496 gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataa 6397  T
Q  217 ctttcaaatttcacacgaac 236  Q
    ||||||||||| ||| ||||    
T  6396 ctttcaaattttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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