View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4700-Insertion-1 (Length: 603)
Name: NF4700-Insertion-1
Description: NF4700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4700-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 26157003 - 26156619
Alignment:
| Q |
8 |
ataaacttaccaatgctccttgcacgcctcatgcggccaggtctcatgttaaaagtacgaggagcaaaaagcaagg----tccagcatcaatttttgatt |
103 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
26157003 |
ataaacttaccgatgctccttgcacgcctcatgcggccaggtctcatgttaaaaggacgaggagcaaaaagcaaggaaattccagcatcaatttatgatt |
26156904 |
T |
|
| Q |
104 |
aaatcattgaagagggatatccacctaaaacttacatttccaacaccctagtcatcaaataatcatatgtatgactttaaaa-tgattatatgttcaatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| || |
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| T |
26156903 |
aaatcattgaagagggatatccacctaaaacttacatttccaacaccctaatcatcaaataatcatgtgtatgactttaaaagtgataatatgtgaaaat |
26156804 |
T |
|
| Q |
203 |
tttctaacgactaatataattgatgattgatagtgtagaaactcttgacagtgagtgtatctatctaataacaaggggaatgagaatcaatttgaggcaa |
302 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26156803 |
tttctaataactaatataattgatgattgatagtgtaaaaactcttgacaatgagtgtatctatctcataacaaggggaatgagaatcaatttgaggcaa |
26156704 |
T |
|
| Q |
303 |
taggaggaagaataaagcatgtataaccaacagaacagaacacggtatagtttggaatttacaatcaagtccataatacacattt |
387 |
Q |
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| T |
26156703 |
taggaggaagaataaagcatgtataaccaacagaacagaacatggtatagtttggaatttacaatcaagtccataatacacattt |
26156619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 26170301 - 26169917
Alignment:
| Q |
8 |
ataaacttaccaatgctccttgcacgcctcatgcggccaggtctcatgttaaaagtacgaggagcaaaaagcaagg----tccagcatcaatttttgatt |
103 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
26170301 |
ataaacttaccgatgctccttgcacgcctcatgcggccaggtctcatgttaaaaggacgaggagcaaaaagcaaggaaattccagcatcaatttatgatt |
26170202 |
T |
|
| Q |
104 |
aaatcattgaagagggatatccacctaaaacttacatttccaacaccctagtcatcaaataatcatatgtatgactttaaaa-tgattatatgttcaatg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| || |
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| T |
26170201 |
aaatcattgaagagggatatccacctaaaacttacatttccaacaccctaatcatcaaataatcatgtgtatgactttaaaagtgataatatgtgaaaat |
26170102 |
T |
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| Q |
203 |
tttctaacgactaatataattgatgattgatagtgtagaaactcttgacagtgagtgtatctatctaataacaaggggaatgagaatcaatttgaggcaa |
302 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26170101 |
tttctaataactaatataattgatgattgatagtgtaaaaactcttgacaatgagtgtatctatctcataacaaggggaatgagaatcaatttgaggcaa |
26170002 |
T |
|
| Q |
303 |
taggaggaagaataaagcatgtataaccaacagaacagaacacggtatagtttggaatttacaatcaagtccataatacacattt |
387 |
Q |
| |
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| T |
26170001 |
taggaggaagaataaagcatgtataaccaacagaacagaacatggtatagtttggaatttacaatcaagtccataatacacattt |
26169917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 454 - 603
Target Start/End: Complemental strand, 26156552 - 26156403
Alignment:
| Q |
454 |
gtggaatggaaacaaacatagagcataattcaggcttttccttcaacccttgtatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaat |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156552 |
gtggaatggaaacaaacatagagcataattcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaat |
26156453 |
T |
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| Q |
554 |
ccgtggaaaagacctgaatcctatccgcatatcccttagcaaagcactga |
603 |
Q |
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| T |
26156452 |
cggtggaaaagacctgaatcctatccgcatatcccttagcaaagcactga |
26156403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 454 - 603
Target Start/End: Complemental strand, 26169850 - 26169701
Alignment:
| Q |
454 |
gtggaatggaaacaaacatagagcataattcaggcttttccttcaacccttgtatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaat |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169850 |
gtggaatggaaacaaacatagagcataattcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaat |
26169751 |
T |
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| Q |
554 |
ccgtggaaaagacctgaatcctatccgcatatcccttagcaaagcactga |
603 |
Q |
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| T |
26169750 |
cggtggaaaagacctgaatcctatccgcatatcccttagcaaagcactga |
26169701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 55163832 - 55163949
Alignment:
| Q |
270 |
ataacaaggggaatgagaatcaatttgaggcaataggaggaagaataaagcatgtataaccaacagaacagaacacggtatagtttggaatttacaatca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||| |||||| | |
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| T |
55163832 |
ataacaaggggaatgagaatcaatttgaggcaacaggaggaagaataaagcatgtataacgaacataacagaacatggtgtagtttggaatatacaatta |
55163931 |
T |
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| Q |
370 |
agtccataatacacattt |
387 |
Q |
| |
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|||| ||||| ||||||| |
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| T |
55163932 |
agtcaataatgcacattt |
55163949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 455 - 538
Target Start/End: Original strand, 55164512 - 55164595
Alignment:
| Q |
455 |
tggaatggaaacaaacatagagcataattcaggcttttccttcaacccttgtatgagtgagtccaacacatgcatcaacaaaat |
538 |
Q |
| |
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||||||||| ||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
55164512 |
tggaatggatacaaacataaagtataattaaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat |
55164595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 44784526 - 44784581
Alignment:
| Q |
28 |
tgcacgcctcatgcggccaggtctcatgttaaaagtacgaggagcaaaaagcaagg |
83 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
44784526 |
tgcacgcctcatgcggccagatctcatgttaaaaggacgaggagcaaaaagcaagg |
44784581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 539
Target Start/End: Original strand, 28094232 - 28094290
Alignment:
| Q |
481 |
attcaggcttttccttcaacccttgtatgagtgagtccaacacatgcatcaacaaaatc |
539 |
Q |
| |
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||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
28094232 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatc |
28094290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 2896216 - 2896163
Alignment:
| Q |
28 |
tgcacgcctcatgcggccaggtctcatgttaaaagtacgaggagcaaaaagcaa |
81 |
Q |
| |
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|||||||||||| ||||| | |||||||||||||| ||| |||||||||||||| |
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| T |
2896216 |
tgcacgcctcattcggcccgatctcatgttaaaaggacggggagcaaaaagcaa |
2896163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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