View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4700-Insertion-2 (Length: 460)
Name: NF4700-Insertion-2
Description: NF4700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4700-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 25615311 - 25615440
Alignment:
| Q |
331 |
tttcaatgagatacattgcttaatatgttttagcttcgatatagaatcnnnnnnngtcaactgaattgaaatttttgttctcaatgtattacataaattc |
430 |
Q |
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| T |
25615311 |
tttcaatgagatacattgcttaatatgttttagcttcgatatagaatctttttttgtcaactgaattgaaatttttgttctcaatgtattacataaattc |
25615410 |
T |
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| Q |
431 |
tttctatgttcgatgtccttgaatttgtaa |
460 |
Q |
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| T |
25615411 |
tttctatgttcgatgtccttgaatttgtaa |
25615440 |
T |
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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 331
Target Start/End: Original strand, 24992809 - 24992972
Alignment:
| Q |
188 |
actcaattttgttgtgttcgttgattgtggtgccttctctccctatttatagttacagataatca--------------------tcagaagctcaagcg |
267 |
Q |
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| T |
24992809 |
actcaattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaattaatcagaagctcaagcg |
24992908 |
T |
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| Q |
268 |
gagatcaaagcccggaaactttgaatgtctttgagaaaagacagttgaagaggtcacctctgat |
331 |
Q |
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| T |
24992909 |
gagatcatagcccgaaaactttgaatgacttagagaaaagacagttgaagaggtcacctctgat |
24992972 |
T |
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