View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4700-Insertion-4 (Length: 222)

Name: NF4700-Insertion-4
Description: NF4700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4700-Insertion-4
NF4700-Insertion-4
[»] chr6 (1 HSPs)
chr6 (8-190)||(14368507-14368689)
[»] chr8 (1 HSPs)
chr8 (8-190)||(26464073-26464254)
[»] chr5 (1 HSPs)
chr5 (27-113)||(15316837-15316923)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 14368689 - 14368507
Alignment:
Q  8 atatttttgtccattataataggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaag 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  14368689 atatttttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacactggagttgaatacagtagcgaacaaat 14368590  T
Q  108 gaaacagtgagaaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaagttttgaaa 190  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14368589 gaatcagtgaggaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaatttttgaaa 14368507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 26464254 - 26464073
Alignment:
Q  8 atatttttgtccattataataggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaag 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  26464254 atatttttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacgctgaagttgaatacagtagcgaacaaaa 26464155  T
Q  108 gaaacagtgagaaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaagttttgaaa 190  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||| ||||||||    
T  26464154 gaaacagtgaggaagggaacagattgtagatatctagaaccattgaaaaggttgatttccaaa-attaagggaaattttgaaa 26464073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 15316837 - 15316923
Alignment:
Q  27 taggatatttggtactgatataggatacagaaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaaggaaaca 113  Q
    |||||||||||| |||||| |||||||||||||||| |||||||| |||| ||  ||| ||||| |||||  ||| |||| ||||||    
T  15316837 taggatatttggaactgatgtaggatacagaaagttaaaagcattgaagagcagagaatttgaagacagttacgagcaaaagaaaca 15316923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University