View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4700_low_1 (Length: 598)
Name: NF4700_low_1
Description: NF4700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4700_low_1 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 47815403 - 47815988
Alignment:
| Q |
18 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47815403 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcatg |
47815502 |
T |
|
| Q |
118 |
cttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggt----aggcagccacaaattgaacgtgttactcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47815503 |
cttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcaggcagccacaaattgaacgtgttactcaa |
47815602 |
T |
|
| Q |
214 |
atcttgggccgtcgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47815603 |
atcttgggccgtcgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatg |
47815702 |
T |
|
| Q |
314 |
gtgatgtccctgaaaccatagagggaaagcaggttggtgnnnnnnnncttttctatttctagtctacaaattgttgttggtttggttcagggtatttgct |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47815703 |
gtgatgtccctgaaaccatagagggaaagcaggttggtgttttttttcttttctatttctagtctacaaattgttgttggtttggttcagggtatttgct |
47815802 |
T |
|
| Q |
414 |
ctttgtttttcagcaccgcaaacatgttcaagttgctcaatgtattaatatgttttcaacatattgtccattt-cttctactactacattttgactggaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
47815803 |
ctttgtttttcagcaccgcaaacatgttcaagttgatcaatgtattaatatgttttcaacatattgtccatttacttctaatactacattttgactggaa |
47815902 |
T |
|
| Q |
513 |
agtaactttcttgcatcaagatggttagactagttctgaagcaccttccttgtatttagtcatatgattgtgttgttgttttgagt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47815903 |
agtaactttcttgcatcaagatggttagactagttctgaagcaccttccttgtatttagtcatatgattgtgttgttgttttgagt |
47815988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 47379945 - 47380521
Alignment:
| Q |
18 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47379945 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaatcctagttttctcaatgacagattgttaatgacgtctcattatgtgttcaagcatg |
47380044 |
T |
|
| Q |
118 |
cttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47380045 |
cttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatct |
47380144 |
T |
|
| Q |
218 |
tgggccgtcgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtga |
317 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47380145 |
tgggtcgtcgcaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtga |
47380244 |
T |
|
| Q |
318 |
tgtccctgaaaccatagagggaaagcaggttggtgnnnnnnnncttttctatttctagtctacaaattgttgttggtttggttcagggtatttgctcttt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47380245 |
tgtccctgaaaccatagagggaaagcaggttggtgtttctttc--tttctatttctagtttacaaattgttgttggtttggtt-----tatttgctcttt |
47380337 |
T |
|
| Q |
418 |
gtttttcagcaccgcaaacatgttcaagttgctcaatgtattaatatgttttcaacata-ttgtccattt-cttctactactacattttgactggaaagt |
515 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||| | |||||||||||||||||||||| |
|
|
| T |
47380338 |
ctttttcagcaccacaaacatgttcaagttgctcaatgtattaatatgatttcaacatatttgcccatttacttccaatactacattttgactggaaagt |
47380437 |
T |
|
| Q |
516 |
aactttcttgcatcaagatggttagactagttctgaagcacctt-ccttgtatttagtcatatgattgtgttgttgttttgagt |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47380438 |
aactttcttgcatcaagatggttagactagttctggagcaccttgcgttgtatttagtcatatgattgtgttgttgttttgagt |
47380521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 158 - 341
Target Start/End: Original strand, 45112214 - 45112397
Alignment:
| Q |
158 |
agggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatcttgggccgtcgtaccaaaaataatccttgtcttattgggga |
257 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
45112214 |
agggaaagttggatcctgttgtgggaaggcaaccacaaattgaacgtgtcacccaaattttaggccgtcgaaccaaaaataatccttgtcttattggaga |
45112313 |
T |
|
| Q |
258 |
acctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtgatgtccctgaaaccatagagggaaa |
341 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| || || |||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
45112314 |
acctggtgttgggaagacagcaattgctgaaggtcttgctcagcggattgcaaatggtgatgtacctgaaacaatcgagggaaa |
45112397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 46913713 - 46913857
Alignment:
| Q |
93 |
acgtctcattatgtgttcaagcatgcttattttctc-tc-gtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagc |
190 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||||||| || |||||| |||| ||| ||||||| ||||||||||||| | ||| || ||||||| ||| |
|
|
| T |
46913713 |
acgtatcaatatgtgttgaaacatgcttattttctcctctgtctttctcctaaaaactcaaaatgctagggaaaattgtagcctattttgggtagatagc |
46913812 |
T |
|
| Q |
191 |
cacaaattgaacgtgttactcaaatcttgggccgtcgtaccaaaa |
235 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| |||| ||| |||| |
|
|
| T |
46913813 |
cacaaatcaaacatgttactcaaatcatgggtcgtcatactaaaa |
46913857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 45112094 - 45112156
Alignment:
| Q |
18 |
tatggcaccaatttgaccaagctagcagaggaggtaacttaca-atcctagttttcttaatgac |
80 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
45112094 |
tatggaaccaatttgaccaagctagcagaagaggtaa-tgacagttcctagttttcttaatgac |
45112156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 17717145 - 17717723
Alignment:
| Q |
17 |
atatggcaccaatttgaccaagctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcat |
116 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717145 |
atatggcaccaatttgatcaagctagcggaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcat |
17717244 |
T |
|
| Q |
117 |
gcttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatc |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717245 |
gtttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatc |
17717344 |
T |
|
| Q |
217 |
ttgggccgtcgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtg |
316 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717345 |
ttgggtcgtcttaccaaaaataatccttgtcttattggggaacctggtgttggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtg |
17717444 |
T |
|
| Q |
317 |
atgtccctgaaaccatagagggaaagcaggttggtgnnnnnnnncttttctatttctagtctacaaattgttgttggtttggttcagggtatttgctctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17717445 |
atgtccctgaaaccatagagggaaagcaggttggtgttttttttcttttttatttctagtctacaatttgttgttggtttggttcagggtatttgctctt |
17717544 |
T |
|
| Q |
417 |
tgtttttcagcaccgcaaacatgttcaagttgctcaatgtattaatatgttttcaacatattgtccattt-cttctactactacattttgactggaaagt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
17717545 |
tgtttttcagcaccgcaaacatgttcaagttgttcaatgtattaatatgttttcaacatattgtccatttacttctaatactacattttgactggaaagt |
17717644 |
T |
|
| Q |
516 |
aactttcttgcatcaagatggttagactagttctgaagcaccttccttgtatttagtcatatgattgtgttgttgtttt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717645 |
aactttcttgcatcaagatggttagactagttctgaagcaccttccttgtatttagtcatatgattgtgttgttgtttt |
17717723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 38 - 542
Target Start/End: Complemental strand, 34056424 - 34055921
Alignment:
| Q |
38 |
gctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcatgcttattttctc-tc-gtctt |
135 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
34056424 |
gctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatgatgtctcattatgtgttgaagcatgcttattttctcctctgtctt |
34056325 |
T |
|
| Q |
136 |
tgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatcttgggccgtcgtaccaaaa |
235 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||| || |||| |||||| |
|
|
| T |
34056324 |
tatccaaaaaattcaaaatcctagggaaaattggatcctgttgtgggcaggcagtcataaattgaacgtgtcactcaaatcttaggtcgtcactccaaaa |
34056225 |
T |
|
| Q |
236 |
ataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtgatgtccctgaaaccataga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
34056224 |
ataatccttgtcttattggggaacctggtgtcggaaagacagctattgttgaaggtctcccccaacggattgcaaa---tgatgtccacgaaacc-taga |
34056129 |
T |
|
| Q |
336 |
gggaaagcaggttggtgnnnnnnnncttttctatttctagtctacaaattgttgttggtttggttcagggtatttgctctttgtttttcag---caccgc |
432 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||| | |
|
|
| T |
34056128 |
--gaaagaaggttggtgtttttttttctttctatttctagtctacaaattgttgttggtttgattcagggtatctgctcttt-cttttcagcgccaccac |
34056032 |
T |
|
| Q |
433 |
aaacatgttcaagttgctcaatgtattaatatgttttcaacatattgtccattt-cttctactactacattttgactggaaagtaactttcttgcatcaa |
531 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||| | ||||| ||||| |
|
|
| T |
34056031 |
aaacatgttcaagttgctccatttattaatatgatttcaacatattgtccatttacttctaatactacattttgactgggaagtaattgtcttgtatcaa |
34055932 |
T |
|
| Q |
532 |
gatggttagac |
542 |
Q |
| |
|
||||||||||| |
|
|
| T |
34055931 |
gatggttagac |
34055921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 40242986 - 40243316
Alignment:
| Q |
18 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaatcc-tagttttcttaatgacagattgttgatgacgtctcattatgtgttcaagcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||| |||||| |||||| | || | |
|
|
| T |
40242986 |
tatggcaccaatttgaccaagctagcagaggaggtaacttacaattcgtagttttcttcatgacagattgtagatgatccctcattctgtgttgatgctt |
40243085 |
T |
|
| Q |
117 |
gcttattttctctcgtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagccacaaattgaacgtgttactcaaatc |
216 |
Q |
| |
|
|| ||||| |||| | || | | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40243086 |
actaatttt-tctctttcgtga----tgatgtcaaaatcccagggaaaattagatcctgttgtgggtaggcagccacaaattgaacgtgtcactcaaatc |
40243180 |
T |
|
| Q |
217 |
ttgggccgtcgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagctattgctgaaggtctcgcccaacggattgcaaatggtg |
316 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
40243181 |
ttgggtcgccgtaccaaaaataatccttgtcttattggggaacctggtgtcggaaagacagcaattgctgaaggtcttgctcaacggattgcaaatggtg |
40243280 |
T |
|
| Q |
317 |
atgtccctgaaaccatagagggaaagcaggttggtg |
352 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
40243281 |
atgtccccgaaaccatagagggaaagaaggttggtg |
40243316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 5337531 - 5337675
Alignment:
| Q |
93 |
acgtctcattatgtgttcaagcatgcttattttctctc--gtctttgtcctctaaaatcaaaatcctagggaaaattggatcctgttgtgggtaggcagc |
190 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||| |||||| |||| ||| ||||||| ||||||||||||| | || || ||||||| ||| |
|
|
| T |
5337531 |
acgtatcattatgtgttgaaacatgcttattttctcttctgtctttctcctaaaaactcaaaatgctagggaaaattgtagccacttatgggtagatagc |
5337630 |
T |
|
| Q |
191 |
cacaaattgaacgtgttactcaaatcttgggccgtcgtaccaaaa |
235 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | || |||||||| |
|
|
| T |
5337631 |
cacaaattaaacgtgttactcaaatcatgggtcatcataccaaaa |
5337675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 18939661 - 18939733
Alignment:
| Q |
98 |
tcattatgtgttcaagcatgcttattttct-ctc-gtctttgtcctctaaaatcaaaatcctagggaaaattg |
168 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| |||||| |||| ||| ||||||| ||||||||||||| |
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| T |
18939661 |
tcattatgtgttgaaacatgcttattttctcctctgtctttctcctaaaaactcaaaatgctagggaaaattg |
18939733 |
T |
|
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