View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4700_low_4 (Length: 325)
Name: NF4700_low_4
Description: NF4700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4700_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 5558778 - 5558486
Alignment:
| Q |
11 |
aatgagaggccaagtaattgttgatttattagctaattattccattgatagcaatgatgattttgaacaagaataacaaacaaaattcacgtgcaaatta |
110 |
Q |
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| T |
5558778 |
aatgagaggccaagtaattgttgatttattagctaattattccattgatagcaatgatgattttgaacaagaataaaaaacaaaattcatgtgcaaatta |
5558679 |
T |
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| Q |
111 |
tcaatcaaatgtttaaataatgaagtaaattatgaagcttggataatagcttatcttgagttatttggtcataaactgtcaattaaaacttaattacaag |
210 |
Q |
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| T |
5558678 |
tcaatcaaatgtttaaataatgaagtaaaatatgaagcttggata---gcttatcttgagttatttggtcataaactgtcaattaaaacttaattacaag |
5558582 |
T |
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| Q |
211 |
tgtgaaagtcttaatctctatagatattttgaaatagctaatagattaatttcaaagtttgatgtggtagttttggaatatataccttgacaagaa |
306 |
Q |
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| T |
5558581 |
tgtgaaagtcttaatctctatagatattttgaaatagctaatagattaatttcaaagtttgatgtggtagttttggaatatataccttgacaagaa |
5558486 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 30790119 - 30790039
Alignment:
| Q |
193 |
ttaaaacttaattacaagtgtgaaagtcttaatctctatagatattttgaaatagctaatagattaatttcaaagtttgat |
273 |
Q |
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| T |
30790119 |
ttaaaacataattataaatgtgaaagtcttaatctattcagatattttgaaatagctaatatattactttctaaatttgat |
30790039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 32246840 - 32246916
Alignment:
| Q |
9 |
gcaatgagaggccaagtaattgttgatttattagctaattattccattgatagcaatgatgattttgaacaagaata |
85 |
Q |
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| T |
32246840 |
gcaatgaaagccaaagtaattgttgatttctttgctaactattttgttgatagtgatgatgatttcgaacaagaata |
32246916 |
T |
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