View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4701-Insertion-1 (Length: 618)
Name: NF4701-Insertion-1
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4701-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 62 - 457
Target Start/End: Original strand, 44478056 - 44478452
Alignment:
| Q |
62 |
tgttatagtcattggattgtgcaaaataaattacagcaaatgattcaatgaagaattttacaaggtgaaacaaaacaagctctccaatgatattttcctg |
161 |
Q |
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| T |
44478056 |
tgttatagtcaatggattgtgcaaaataaattacagcaaatgattcaatgaagaattttacaaggtgaaacaaaacaagctctccaatgatattttcctg |
44478155 |
T |
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| Q |
162 |
cactcacgtgaagggtaaaatatttatacaaggtaaatcaaaaccattgattgccttggctaaagtactataaaagataaactgtctgcaatataacaga |
261 |
Q |
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| T |
44478156 |
cactcacgtgaagggtaaaatatttatacagggtaaatcaaaaccattgattgccttggctaaagtactataaaagataaactgtctgcaatataacaga |
44478255 |
T |
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| Q |
262 |
atgtactgtaacttaaggagaagagcttctcgtattcatttcaagagaaacaacgattaataataatggcagtgctgggtaggaaaaattta-ccgatct |
360 |
Q |
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| T |
44478256 |
atgtactgtaactttaggagaagagcttctcatattcatttcaagagaaacaacgattaataataatggcagtgctgggtaggaaaaaaaaattcgatct |
44478355 |
T |
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| Q |
361 |
tgccacaacataggagagaaaaagaaaaggagacaacagaagtttcaatagatctgaatctgattcaaatgcaaactaatccaaacaattactcata |
457 |
Q |
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| T |
44478356 |
tgccacaacataggagagaaaaagaaaaggagacaacagaagtttcaatagatctgaatctgattcaaatgcaaactaatccaaacaattactcata |
44478452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 471 - 618
Target Start/End: Original strand, 44478536 - 44478683
Alignment:
| Q |
471 |
agtgaaaataaactccaacttaattacaaaatacatccaaataaccttcatctgacttcaattttataaaatgtctaaagattttcacacacttagtttg |
570 |
Q |
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| T |
44478536 |
agtgaaaataaactccaacttaattacaaaatacatccaaataaccttcatctgacatcaattttataaaatgtctaaagattttcacacacttggtttg |
44478635 |
T |
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| Q |
571 |
atcaggaaaccacgtacaggtcacagcaacattagtaagttcatatga |
618 |
Q |
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| T |
44478636 |
atcaggaaaccacgtacaggtcacagcaacattagtaagttcatatga |
44478683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 44477921 - 44477978
Alignment:
| Q |
8 |
ataggttttatctaataaaagagtgggtgcnnnnnnngaagaagtcagtgttagtgtt |
65 |
Q |
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| T |
44477921 |
ataggttttatctaataaaagagtgggtgctttttttgaagaagtcagtgttagtgtt |
44477978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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