View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701-Insertion-2 (Length: 507)

Name: NF4701-Insertion-2
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701-Insertion-2
NF4701-Insertion-2
[»] chr5 (1 HSPs)
chr5 (8-507)||(14695806-14696303)
[»] scaffold0189 (2 HSPs)
scaffold0189 (328-446)||(10561-10680)
scaffold0189 (350-446)||(10636-10732)
[»] chr2 (2 HSPs)
chr2 (323-441)||(35401035-35401153)
chr2 (325-391)||(38832829-38832895)
[»] chr8 (2 HSPs)
chr8 (327-481)||(993954-994108)
chr8 (324-392)||(43752765-43752832)
[»] chr4 (2 HSPs)
chr4 (324-441)||(27758127-27758243)
chr4 (114-303)||(27758224-27758413)
[»] chr7 (1 HSPs)
chr7 (323-391)||(48473913-48473981)
[»] chr3 (2 HSPs)
chr3 (129-207)||(28984025-28984103)
chr3 (327-360)||(28983195-28983228)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 14696303 - 14695806
Alignment:
Q  8 atacattacttcaatttcaagcaatgacatggtgagggtgatttgttacgacatgttggatgatacacctagttagacgagagattttgtgagaaagaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14696303 atacattacttcaatttcaagcaatgacatggtgagggtgatttgttaccacatgttggatgatacacctagttagacgagagattttttgagaaagaag 14696204  T
Q  108 agttacacttgtttacgtttagttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttag 207  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||    
T  14696203 agttacacttgattacatttagttaattccctttcctaattttatagtttggtttattttctttcctaaatttaagattctgttattttcttttctttag 14696104  T
Q  208 attaatgcaagtcgttgtgccaatagtaatgatatatgttgtaaggggaaccaattctgatatgtcgaataataacaagttttcactttcttccttccnn 307  Q
    ||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  14696103 att-atgcaagttgttgtgccaagagtaatgatatatgatgtaaggggaaccaattctgatatgtcgaataataacaagttttcactttcttccttc--a 14696007  T
Q  308 nnnnnnnnnnnnnnncaaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatct 407  Q
                   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||  ||||||||||||||    
T  14696006 aaaaaaaaaaaaaaacaaggtttcactttcttccctaatttctcatctatttcctctataggagtttacactcacttaaagagtgccattttcttcatct 14695907  T
Q  408 attttctctctaggagttagcacttactcgaagaatgcc-nnnnnnncactctaaaataattagggtgtatcattggactacacagttcagtgactaaga 506  Q
    |||||||||||||||||||||||| ||||||||| ||||        |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  14695906 attttctctctaggagttagcactcactcgaagagtgcctttttcttcactctaaaataattaaggtgtatcattggactacacagttcagttactaaga 14695807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 10561 - 10680
Alignment:
Q  328 tttcactttcttccctaatttctcatctattttctcta-taggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagtta 426  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||     
T  10561 tttcactttctcccctaatttctcatctattttctctcctaggagtttacacttactcgaagagtgccattttcttcatctcttttctctctaggagttt 10660  T
Q  427 gcacttactcgaagaatgcc 446  Q
     |||| ||||||||| ||||    
T  10661 acactcactcgaagagtgcc 10680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 446
Target Start/End: Original strand, 10636 - 10732
Alignment:
Q  350 tcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagttagcacttactcgaagaatgcc 446  Q
    |||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||| | |||||| |||| ||||||||| ||||    
T  10636 tcatctcttttctctctaggagtttacactcactcgaagagtgccattttcttcatctcttttctctccatgagttaacactcactcgaagagtgcc 10732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 323 - 441
Target Start/End: Original strand, 35401035 - 35401153
Alignment:
Q  323 caaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctagga 422  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||||| || ||||  |||||    
T  35401035 caaggtttcactttcttccataatttctcatctattttctctctaggagattacactcactcgaagagtgccattttcttcatctcttgtctcagtagga 35401134  T
Q  423 gttagcacttactcgaaga 441  Q
    |||  |||| |||||||||    
T  35401135 gttgacactcactcgaaga 35401153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 38832829 - 38832895
Alignment:
Q  325 aggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagt 391  Q
    |||||||||||||||| | |||||||| ||   ||| ||||||||| || |||||||||||||||||    
T  38832829 aggtttcactttcttctccaatttctcttcacgtttttctataggatttgacactcactcgaagagt 38832895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 481
Target Start/End: Original strand, 993954 - 994108
Alignment:
Q  327 gtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggagtta 426  Q
    ||||||||||||||| |||||||||||||  ||||||| ||||||||||||| || |||||||||  |||||| ||||||| | ||||||| ||||||||    
T  993954 gtttcactttcttccttaatttctcatctgatttctctctaggagtttacacgcattcgaagagtgccatttttttcatctctgttctctcaaggagtta 994053  T
Q  427 gcacttactcgaagaatgccnnnnnnncactctaaaataattagggtgtatcatt 481  Q
     |||| |||| |||| |||        |||||||| |||||||||||||||||||    
T  994054 acactcactcaaagagtgctttttcttcactctaagataattagggtgtatcatt 994108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 43752765 - 43752832
Alignment:
Q  324 aaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtc 392  Q
    ||||||||| ||||||| | || ||||| || | ||||||| |||||||| ||||||||||||||||||    
T  43752765 aaggtttcagtttcttctccaaattctcttc-actttctctctaggagttgacactcactcgaagagtc 43752832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 324 - 441
Target Start/End: Complemental strand, 27758243 - 27758127
Alignment:
Q  324 aaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagtctcattttcttcatctattttctctctaggag 423  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||  |||||||| ||||||||| ||| | | ||||||||||| |||||||||||||||    
T  27758243 aaggtttcactttcttccttaatttgtcatctattttctctctaaaagtttacattcactcgaaaagtgtta-tttcttcatctcttttctctctaggag 27758145  T
Q  424 ttagcacttactcgaaga 441  Q
    |   |||| |||||||||    
T  27758144 tcgacactcactcgaaga 27758127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 303
Target Start/End: Complemental strand, 27758413 - 27758224
Alignment:
Q  114 acttgtttacgtttagttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttagattaat 213  Q
    ||||| |||| || ||||| |||| ||| |||||||||| |||| |||||||||||||  |||||||| ||||  ||||||| | ||| |||||||| ||    
T  27758413 acttgattacattaagttatttcctttttctaattttatggtttagtttatttccttttctaaatttatgattatgttatttcccttttcttagatt-at 27758315  T
Q  214 gcaagtcgttgtgccaatagtaatgatatatgttgtaa-ggggaaccaattctgatatgtcgaataataacaagttttcactttcttcctt 303  Q
    |||||| ||| ||| || | | |  ||||||| |||||  | |||||||||| ||||||| ||||||||| ||| ||||||||||||||||    
T  27758314 gcaagttgttatgctaagattgactatatatgatgtaatagtgaaccaattcagatatgttgaataataataaggtttcactttcttcctt 27758224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 48473913 - 48473981
Alignment:
Q  323 caaggtttcactttcttccctaatttctcatctattttctctataggagtttacactcactcgaagagt 391  Q
    ||||| |||||||||||||| ||||| |||||| |||||||| |||||||  |||||||||||||||||    
T  48473913 caagggttcactttcttccccaatttttcatctcttttctctctaggagtcgacactcactcgaagagt 48473981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 28984103 - 28984025
Alignment:
Q  129 gttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttag 207  Q
    |||| |||||||| |||||||||  |||  |||||||||||||| || ||||| ||||  ||||||||| |||||||||    
T  28984103 gttatttccctttactaattttacggttcagtttatttcctttcctagatttatgattatgttattttcctttccttag 28984025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 28983228 - 28983195
Alignment:
Q  327 gtttcactttcttccctaatttctcatctatttt 360  Q
    |||||||||||| |||||||||||||||||||||    
T  28983228 gtttcactttctcccctaatttctcatctatttt 28983195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University