View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701-Insertion-5 (Length: 330)

Name: NF4701-Insertion-5
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701-Insertion-5
NF4701-Insertion-5
[»] chr3 (3 HSPs)
chr3 (8-232)||(4032528-4032758)
chr3 (140-232)||(30649752-30649843)
chr3 (282-316)||(4032794-4032828)
[»] chr1 (6 HSPs)
chr1 (156-330)||(13954433-13954607)
chr1 (160-230)||(5245996-5246066)
chr1 (157-232)||(33663412-33663487)
chr1 (157-232)||(33667265-33667340)
chr1 (151-232)||(33666879-33666960)
chr1 (159-225)||(33662121-33662187)
[»] chr8 (3 HSPs)
chr8 (144-232)||(14717347-14717435)
chr8 (157-232)||(26443333-26443408)
chr8 (156-231)||(30735619-30735694)
[»] chr7 (1 HSPs)
chr7 (153-231)||(41038012-41038090)
[»] chr4 (3 HSPs)
chr4 (152-230)||(5845008-5845086)
chr4 (157-239)||(15639302-15639385)
chr4 (181-230)||(5861850-5861899)
[»] chr2 (7 HSPs)
chr2 (153-230)||(31972615-31972692)
chr2 (151-232)||(43587994-43588075)
chr2 (156-232)||(10111026-10111102)
chr2 (151-230)||(37161649-37161728)
chr2 (157-232)||(37341584-37341659)
chr2 (157-232)||(42614459-42614534)
chr2 (159-204)||(13188325-13188370)
[»] chr5 (9 HSPs)
chr5 (156-232)||(19699891-19699967)
chr5 (156-232)||(20016627-20016703)
chr5 (157-232)||(19347485-19347560)
chr5 (157-231)||(18174115-18174189)
chr5 (157-231)||(33972109-33972183)
chr5 (157-233)||(33451010-33451086)
chr5 (153-232)||(9121318-9121396)
chr5 (157-230)||(43292290-43292362)
chr5 (156-232)||(24464470-24464545)
[»] chr6 (1 HSPs)
chr6 (158-232)||(1335341-1335415)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 4032528 - 4032758
Alignment:
Q  8 cattctatatgatgtatcaatgacaatctcaaaacttccaaacttgagaatgaaggcagagacaagtgagacaatcacagagttatatatggcataaatc 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4032528 cattctatatgatgtataaatgacaatctcaaaacttccaaacttgagaatgaaggcagagacaagtgagacaatcacaaagttatatatggcataaatc 4032627  T
Q  108 acagcataaaatttcacattattctttcaatt------gaaaaagaaaaagaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagcca 201  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4032628 acagcataaaatttcacattattctttcaattgaaaaagaaaaagaaaaagaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagcca 4032727  T
Q  202 cacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||||||||||    
T  4032728 cacgctctaaccaactgagctattccagctt 4032758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 30649752 - 30649843
Alignment:
Q  140 gaaaaagaaaaagaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649752 gaaaaataaaaagaaa-cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 30649843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 4032794 - 4032828
Alignment:
Q  282 atcttactgttttattttctcctcacgcgccaaca 316  Q
    |||||||||||||||||||| ||||||||||||||    
T  4032794 atcttactgttttattttcttctcacgcgccaaca 4032828  T

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Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 13954607 - 13954433
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctttgatgttcattcgtagtttatat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  13954607 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctttgttgttcatttatagtttatat 13954508  T
Q  256 tatacataaataaagttttgcttatcatcttactgttttattttctcctcacgcgccaacaatattcttcatact 330  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13954507 tatacataaatatatttttgcttatcatcttactgttttattttctcctcacgcgccaacaatattcttcatact 13954433  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 5245996 - 5246066
Alignment:
Q  160 tagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245996 tagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 5246066  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 33663412 - 33663487
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  33663412 cgctagaaggaggggttgaacctccgacctcgtggttaacagccacacgctctaacccactgagctattccagctt 33663487  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 33667265 - 33667340
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  33667265 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaacccactgagctattcctgctt 33667340  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 33666879 - 33666960
Alignment:
Q  151 agaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  33666879 agaaaacgctaaaaggaggggttgaacctctgaccttgtggttaacaaccatacgctctaacccactgagctattccagctt 33666960  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 33662121 - 33662187
Alignment:
Q  159 ctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctatt 225  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||| ||||||| |||||||||||    
T  33662121 ctaggaggaggggttgaacctccgaccttgtggttaaggtccacacgttctaacccactgagctatt 33662187  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 14717435 - 14717347
Alignment:
Q  144 aagaaaaagaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14717435 aagaaaagaaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 14717347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 26443408 - 26443333
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26443408 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 26443333  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 30735694 - 30735619
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 231  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30735694 tcgctagaaggaggggtcgaacctccgaccttgtggttaacagccacacgctctaaccatctgagctattccagct 30735619  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 41038090 - 41038012
Alignment:
Q  153 aaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41038090 aaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 41038012  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 5845008 - 5845086
Alignment:
Q  152 gaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5845008 gaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 5845086  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 15639385 - 15639302
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct-ttgatgtt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15639385 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctattgatgtt 15639302  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 5861850 - 5861899
Alignment:
Q  181 cgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5861850 cgaccttgtggttaacagccacacgctctaactaactgagctattccagc 5861899  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31972615 - 31972692
Alignment:
Q  153 aaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31972615 aaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 31972692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 43587994 - 43588075
Alignment:
Q  151 agaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43587994 agaaaacgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 43588075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 10111102 - 10111026
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111102 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 10111026  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 37161649 - 37161728
Alignment:
Q  151 agaaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37161649 agaaaacgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 37161728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 37341659 - 37341584
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37341659 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 37341584  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 42614534 - 42614459
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42614534 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 42614459  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 13188370 - 13188325
Alignment:
Q  159 ctagaaggaggggttgaacctccgaccttgtggttaacagccacac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13188370 ctagaaggaggggttgaacctccgaccttgtggttaacagccacac 13188325  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 19699891 - 19699967
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19699891 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 19699967  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 20016703 - 20016627
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016703 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 20016627  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 19347485 - 19347560
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19347485 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 19347560  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 18174189 - 18174115
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18174189 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 18174115  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 33972109 - 33972183
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972109 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagct 33972183  T

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Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 33451010 - 33451086
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcttt 233  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33451010 cgctagaaggagggattgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcttt 33451086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 9121318 - 9121396
Alignment:
Q  153 aaatcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9121318 aaatcgctagaaggaggggttgaacctcc-accttgtggttaacagccacacgctctaaccaactgagctattccagctt 9121396  T

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Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 43292290 - 43292362
Alignment:
Q  157 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 230  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43292290 cgctagaaggaggg-ttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 43292362  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 24464470 - 24464545
Alignment:
Q  156 tcgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||| ||||| |||||||||||| |||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  24464470 tcgctaaaaggaagggttgaacctctgaccttgtggttag-agccacacacactaaccaactgagctattccagctt 24464545  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 1335341 - 1335415
Alignment:
Q  158 gctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagctt 232  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  1335341 gctagaaggaggggttgaacctccaaccttgtggttaacaaccacacactctaaccaactgagctattcaagctt 1335415  T

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