View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4701_high_5 (Length: 348)
Name: NF4701_high_5
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4701_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 2756325 - 2756002
Alignment:
| Q |
9 |
acttaccatattggatttatcgattcattgagcaagaaaaagacataatctccatgcatcatataattaggctttattaattttttactagtaaactttg |
108 |
Q |
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| T |
2756325 |
acttaccatattggatttatcgattcattgagcaagaaaaagacataatctccatgcatcatataattaggctttattaattttttactagtaaactttg |
2756226 |
T |
|
| Q |
109 |
ggaattcctttatggtggcaccttcttttaagtgcctagtgttcaacaaagcactttccctaatttaaaggttaaaccattaacatttccttttcagttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2756225 |
ggaattcctttatggtggcaccttcttttaagtgcctagtgttcaacaaagcactttccctaatttaaaggttaaaccattaacatttccttttcagttt |
2756126 |
T |
|
| Q |
209 |
ttcttgatcgctgtaccctaaaacaataatatttcttgtgctatatggacctaattagattccatt-ggtaattagttaagcaattnnnnnnnttaagtg |
307 |
Q |
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| T |
2756125 |
ttcttgatcactgtaccctaaaacaataatatttcttgtgctatatggacctaattagattccattgggtaattagttaagcaattaaaaaaattaagtg |
2756026 |
T |
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| Q |
308 |
tatgtttggaaccgcggtggaatg |
331 |
Q |
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|||||||||||||||||||||||| |
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| T |
2756025 |
tatgtttggaaccgcggtggaatg |
2756002 |
T |
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