View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701_high_9 (Length: 234)

Name: NF4701_high_9
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701_high_9
NF4701_high_9
[»] chr3 (9 HSPs)
chr3 (117-217)||(4032371-4032471)
chr3 (17-79)||(4032471-4032533)
chr3 (17-90)||(6138850-6138923)
chr3 (17-90)||(13283175-13283248)
chr3 (17-90)||(6233956-6234029)
chr3 (17-90)||(6241742-6241815)
chr3 (17-90)||(6859417-6859490)
chr3 (17-78)||(6254983-6255044)
chr3 (17-90)||(8572873-8572946)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 4032471 - 4032371
Alignment:
Q  117 ctacttaagaggaaggaaaaggaaaagaagaatgaaaacaagaacatcataaggttgatcattcagaggaacaatattagggtaaattaatttggagttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4032471 ctacttaagaggaaggaaaaggaaaagaagaatgaaaacaagaacatcataaggttgatcattcagaggaacaatattagggtaaattaatttggagttc 4032372  T
Q  217 a 217  Q
    |    
T  4032371 a 4032371  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 4032533 - 4032471
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4032533 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttc 4032471  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6138923 - 6138850
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||    
T  6138923 agaatgcagctgaagaacagaagtaattacagcagcatcttctgtcttcacatacgagttttcgaaattgacat 6138850  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 13283175 - 13283248
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||    
T  13283175 agaatgcagctgaagaacagaagtaattacagcagcatcttctgtcttcacaaacgagttttcgaaattgacat 13283248  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6234029 - 6233956
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||| | ||||||||||||||| ||||||||||    
T  6234029 agaatgcagctgaagaacagaagtaattacaacagcatattctgtttccacagacaagttttcgaaattgacat 6233956  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6241815 - 6241742
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    |||||| |||||||||  ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  6241815 agaatgtagctgaagattagaagtaattacaacagcatcttctgtcttcacagacaagttttcgaaattgacat 6241742  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 6859417 - 6859490
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    ||||||||||||||||||||||| |||  || |||||||| ||||||| |||| |||||||||||||| |||||    
T  6859417 agaatgcagctgaagaacagaagaaattgcaacagcatctcctgtcttgacaggcaagttttcaaaatcgacat 6859490  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 6255044 - 6254983
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagtttt 78  Q
    ||||||||||||||||||| ||||||| ||| |  ||| |||||||||||||||||||||||    
T  6255044 agaatgcagctgaagaacaaaagtaattacaaccccatattctgtcttcacagacaagtttt 6254983  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 8572873 - 8572946
Alignment:
Q  17 agaatgcagctgaagaacagaagtaataacagcagcatcttctgtcttcacagacaagttttcaaaattgacat 90  Q
    |||||||||||||||||||||||||||  || |||||||| || |||| |||| ||||||||| |||| |||||    
T  8572873 agaatgcagctgaagaacagaagtaattgcaacagcatctcctatcttgacaggcaagttttcgaaatcgacat 8572946  T

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