View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701_low_1 (Length: 654)

Name: NF4701_low_1
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701_low_1
NF4701_low_1
[»] chr3 (1 HSPs)
chr3 (16-642)||(52003618-52004245)


Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 642
Target Start/End: Complemental strand, 52004245 - 52003618
Alignment:
Q  16 tcaaactcttatatccattgaaggtagcacttaaatttgcataactaatacatataggagtacgtagtagaccagaaataacaaaacaaaatcaccaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||| ||||||||||    
T  52004245 tcaaactcttatatccattgaaggtagcacttaaatttgcataactaatacatataggagta----gtagaccagaaagaacaaaacaagatcaccaact 52004150  T
Q  116 tgtttgaattttgtgagctaagcccaactttggaagcaatgtgacgtagggtccatatgggaaattttgttcaagggtttagagaatgagagtttgatta 215  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52004149 tgtttgaattttgtgagctaagcccaactttggaagcattgtgaagtagggtccatatgggaaattttgttcaagggtttagagaaagagagtttgatta 52004050  T
Q  216 caagaattaatattacagaattttaaacatacaaagaacctggtagggttttataaaagtaatattattcctttttgcttccagacagttgtgaggttca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  52004049 caagaattaatattacagaattttaaacatacaaagaacctggcaggtttttataaaagtaatattaatcctttttgtttccagacagttgtgagggtca 52003950  T
Q  316 aggttttttagcagaacgacaattatatatatagtctgtgttttttattgcagagatttcggtgaaaaagacataaaccccactgtgaaatataaagcag 415  Q
    | ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52003949 aagttttgtagcaaaatgacaattatatatatagtctgtgttttttattgcagagatttcggtgaaaaagacataaaccccactgtgaaatataaagcag 52003850  T
Q  416 attccctttatgtcttaggctatatagagtatagacaccaa-----tgaatacaacattatacatnnnnnnnnnnnnntatattgcattataataattaa 510  Q
    |||||||||||||||||||||||||| ||||||||||||||     |||||||||||||||||||             ||||||||||||||||||||||    
T  52003849 attccctttatgtcttaggctatatatagtatagacaccaatgaaatgaatacaacattatacataaaaaataaaaaatatattgcattataataattaa 52003750  T
Q  511 tatgccacaaattaacctagctgtattcccctataaattcttcatcttagtattatatactctcaaaaggtgtttcttaccattcacaacacaaacacgt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52003749 tatgccacaaattaacctagctgtattcccctataaattcttcatcttagtattatatactctcaaaaggtgtttcttaccattcacaacacaaacacgt 52003650  T
Q  611 gcacactctcacatagatggagttcgatgatg 642  Q
    ||||||||||||||||||||||||| ||||||    
T  52003649 gcacactctcacatagatggagttctatgatg 52003618  T

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