View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701_low_2 (Length: 461)

Name: NF4701_low_2
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701_low_2
NF4701_low_2
[»] chr2 (11 HSPs)
chr2 (1-461)||(9286187-9286643)
chr2 (104-459)||(9297621-9297971)
chr2 (23-101)||(9285260-9285338)
chr2 (1-80)||(9297498-9297577)
chr2 (23-78)||(9315075-9315130)
chr2 (1-55)||(9069171-9069225)
chr2 (1-55)||(9076768-9076822)
chr2 (23-80)||(9062298-9062355)
chr2 (24-80)||(7117131-7117187)
chr2 (23-78)||(9290965-9291020)
chr2 (76-109)||(9297601-9297634)
[»] chr7 (1 HSPs)
chr7 (114-410)||(7723810-7724106)
[»] scaffold0667 (1 HSPs)
scaffold0667 (28-65)||(1590-1627)
[»] chr3 (1 HSPs)
chr3 (5-41)||(37461427-37461463)


Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 9286187 - 9286643
Alignment:
Q  1 aaagataaaagcagaagagacgtttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtgatctcagagatacaattcaaa 100  Q
    |||||| |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9286187 aaagattaaagcagaagatccttttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtgatctcagagatacaattcaaa 9286286  T
Q  101 aactcaaacactcaaactatatttctaggtaattatcggctaatccatacccaatctgaaacatatacataaatttcaaactaagaattacctattaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9286287 aactcaaacactcaaactatatttctaggtaattatcggctaatccatacccaatctgaaacatatacataaatttcaaactaagaattacctattaagg 9286386  T
Q  201 atctttcaaattgatttcagcagagatgtttcgttgtgtgagagagaggagttacaaagtaaaacaaaagatatagatcatactttatatccaatctaaa 300  Q
     ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9286387 ttctttcaaattgatttcagcagagatgtttcgttgtgt--gagagaggagttacaaagtaaaacaaaagatatagatcatactttatatccaatctaaa 9286484  T
Q  301 ctatgcattttaaaattgtgtcacttggcatttatacattacattgaggctatactattttttctctcacatatataaaacgtggaacatcaaaatagtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9286485 ctatgcattttaaaattgtgtcacttggcatttatacattacattgaggctatactattttttctctcacatatataaaaagtggaacatcaaaatagtt 9286584  T
Q  401 gcttactatatgtctatcaagttggcttgttccgcctcctccttttctctccgaaacactt 461  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9286585 gcttac--aatgtctatcaagttggcttgttccgcctcctccttttctctccgaaacactt 9286643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 104 - 459
Target Start/End: Original strand, 9297621 - 9297971
Alignment:
Q  104 tcaaacactcaaactatatttctaggtaattatcggctaatccatacccaatctgaaacatatacataaatttcaaactaagaattacctattaaggatc 203  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||    
T  9297621 tcaaaaactcaaactatatttttaggtaattatcggctaatccatacccaatctgaaacatatacataaaattgaaactaagaattacctattgaggttc 9297720  T
Q  204 tttcaaattgatttcagcagagatgtttcgttgtgtgagagagaggagttac-aaagtaaaacaaaagatatagatcatactttatatccaatctaaact 302  Q
    |||||||||||||| |||||||||||||  ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9297721 tttcaaattgatttaagcagagatgttt-attgtgt--gagagaggagttacaaaagtaaaacaaaagatatagatcatactttatatccaatctaaact 9297817  T
Q  303 atgcattttaaaattgtgtcactt-ggcatttatacattacattgaggctatactattttttctctcacatatataaaacgtggaacatcaaaatagttg 401  Q
    ||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||    |||||||||||||  |||||||||||| |||||||    
T  9297818 atgcaatttaaaattgtgtcacttaggcatatatacattgcattgaggctatactattttt----tcacatatataaagagtggaacatcaagatagttg 9297913  T
Q  402 cttactatatgtctatcaagttggcttgttccgcctcctccttttctctccgaaacac 459  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9297914 cttactatatgtctatctatttggcttgttccgcctcctccttttctctccgaaacac 9297971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 9285338 - 9285260
Alignment:
Q  23 tttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtgatctcagagatacaattcaaaa 101  Q
    ||||||||||||||||||||||||||||||| |||||| |||| | || ||||||||||||||||  ||||||||||||    
T  9285338 tttagaaaggccagagggagagaggattcataatcaaattcttcacacactaatgtgatctcagacttacaattcaaaa 9285260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9297498 - 9297577
Alignment:
Q  1 aaagataaaagcagaagagacgtttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtga 80  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||||| |||| | || |||||||||    
T  9297498 aaagataaaagcagaagatccttttagaaaggccagagggagagaggattcctcatcaaattcttcacactctaatgtga 9297577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 9315075 - 9315130
Alignment:
Q  23 tttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgt 78  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  9315075 tttagaaaggccagagggagagaggattcatcatcaaattctaaataccctaatgt 9315130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9069225 - 9069171
Alignment:
Q  1 aaagataaaagcagaagagacgtttagaaaggccagagggagagaggattcatca 55  Q
    ||||| ||||||||||||  | |||||||||||||||||||||||||||||||||    
T  9069225 aaagacaaaagcagaagatccatttagaaaggccagagggagagaggattcatca 9069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9076822 - 9076768
Alignment:
Q  1 aaagataaaagcagaagagacgtttagaaaggccagagggagagaggattcatca 55  Q
    ||||||||| ||||||||  | |||||||||||||||||||||||||||||||||    
T  9076822 aaagataaaggcagaagatccttttagaaaggccagagggagagaggattcatca 9076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 9062355 - 9062298
Alignment:
Q  23 tttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtga 80  Q
    |||||| ||||||||||||||||||||||||||||||| |||| | ||| ||||||||    
T  9062355 tttagataggccagagggagagaggattcatcatcaaattcttcacaccttaatgtga 9062298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 7117187 - 7117131
Alignment:
Q  24 ttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgtga 80  Q
    ||||| ||||||||||||||||||||||||||||||| |||| | | ||||||||||    
T  7117187 ttagagaggccagagggagagaggattcatcatcaaattcttcacatcctaatgtga 7117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 9290965 - 9291020
Alignment:
Q  23 tttagaaaggccagagggagagaggattcatcatcaaactctttataccctaatgt 78  Q
    |||||| ||| |||||||||||||| |||||||||||| |||  ||||||||||||    
T  9290965 tttagataggtcagagggagagagggttcatcatcaaattctacataccctaatgt 9291020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 9297601 - 9297634
Alignment:
Q  76 tgtgatctcagagatacaattcaaaaactcaaac 109  Q
    |||||||||||| |||||||||||||||||||||    
T  9297601 tgtgatctcagacatacaattcaaaaactcaaac 9297634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 410
Target Start/End: Original strand, 7723810 - 7724106
Alignment:
Q  114 aaactatatttctaggtaattatcggctaatccatacccaatctgaaacatatacataaatttcaaactaagaattacctattaaggatctttcaaattg 213  Q
    ||||||||||| ||||| ||||||  | |||||||| | || |||||  ||||||||||||||  | |||| | | | || |||||| ||||||||||||    
T  7723810 aaactatatttttaggttattatcaaccaatccataacaaa-ctgaataatatacataaatttgtagctaaaactaaacttttaaggttctttcaaattg 7723908  T
Q  214 atttcagcagagatgtttcgtt-gtgtgagagagaggagttac-aaagtaaa---acaaaagatatagatcatactttatatccaatctaaactatgcat 308  Q
    |||| || ||| ||||||||||  |||||||||||  |||||| ||||||||   || | | |||||||||||||||||||||| |||||||| || |||    
T  7723909 atttaagtagatatgtttcgttaatgtgagagaga--agttacaaaagtaaaaacacgagatatatagatcatactttatatccgatctaaacaatacat 7724006  T
Q  309 tttaaaattgtgtcacttggcatttata-cattacattgaggctatactattttttctctcacatatataaaacgtggaacatcaaaatagttgcttact 407  Q
    ||||||||| ||||||||  ||| |||| ||  |||||||||| |||| |||||||   |||||| ||||||| | | |||||| | | |||||||||||    
T  7724007 tttaaaattttgtcacttatcatatatagcacaacattgaggcaatacaatttttt---tcacatgtataaaaagggaaacatcgacaaagttgcttact 7724103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 1590 - 1627
Alignment:
Q  28 aaaggccagagggagagaggattcatcatcaaactctt 65  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  1590 aaaggccagagagagagaggattcatcatcaaattctt 1627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 37461427 - 37461463
Alignment:
Q  5 ataaaagcagaagagacgtttagaaaggccagaggga 41  Q
    ||||||||||||||  |||||||||||||||||||||    
T  37461427 ataaaagcagaagatccgtttagaaaggccagaggga 37461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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