View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4701_low_3 (Length: 457)

Name: NF4701_low_3
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4701_low_3
NF4701_low_3
[»] chr1 (28 HSPs)
chr1 (310-430)||(41086119-41086238)
chr1 (310-430)||(41090887-41091006)
chr1 (314-433)||(49851417-49851549)
chr1 (314-369)||(21187207-21187262)
chr1 (314-372)||(38860386-38860444)
chr1 (308-373)||(3517951-3518016)
chr1 (314-367)||(7564958-7565011)
chr1 (309-373)||(5750162-5750226)
chr1 (386-432)||(11952719-11952765)
chr1 (307-373)||(42882965-42883031)
chr1 (310-372)||(44757907-44757969)
chr1 (309-370)||(14587722-14587783)
chr1 (305-370)||(18271967-18272032)
chr1 (305-370)||(18276621-18276686)
chr1 (313-370)||(29947055-29947112)
chr1 (312-365)||(30828859-30828912)
chr1 (386-430)||(52632657-52632701)
chr1 (309-372)||(29961095-29961158)
chr1 (314-373)||(50890246-50890305)
chr1 (304-374)||(3475633-3475703)
chr1 (386-431)||(3517880-3517925)
chr1 (308-367)||(11952794-11952850)
chr1 (386-431)||(12700848-12700893)
chr1 (386-431)||(14587648-14587693)
chr1 (307-367)||(12700925-12700985)
chr1 (309-373)||(22335270-22335334)
chr1 (380-432)||(29961179-29961231)
chr1 (332-372)||(50262297-50262337)
[»] chr8 (15 HSPs)
chr8 (308-430)||(20091264-20091399)
chr8 (308-373)||(29544103-29544168)
chr8 (306-432)||(13546487-13546625)
chr8 (306-432)||(13677848-13677986)
chr8 (307-371)||(43098916-43098980)
chr8 (307-370)||(37098094-37098157)
chr8 (303-373)||(12095-12165)
chr8 (309-373)||(6346999-6347063)
chr8 (308-431)||(39260597-39260715)
chr8 (308-373)||(40105624-40105689)
chr8 (314-369)||(586785-586841)
chr8 (314-370)||(32337516-32337572)
chr8 (303-366)||(42280336-42280399)
chr8 (378-433)||(43098842-43098896)
chr8 (305-346)||(36830557-36830598)
[»] chr4 (30 HSPs)
chr4 (332-433)||(6963193-6963295)
chr4 (314-433)||(38551565-38551697)
chr4 (299-373)||(35158406-35158480)
chr4 (304-373)||(35320265-35320334)
chr4 (308-373)||(49374021-49374086)
chr4 (309-373)||(28311261-28311325)
chr4 (303-370)||(15543214-15543281)
chr4 (307-370)||(45458037-45458100)
chr4 (309-433)||(45924302-45924440)
chr4 (309-433)||(4190171-4190308)
chr4 (313-433)||(16451638-16451771)
chr4 (308-373)||(52417308-52417373)
chr4 (305-372)||(45029397-45029464)
chr4 (308-370)||(45228787-45228849)
chr4 (312-374)||(45659880-45659942)
chr4 (318-374)||(4047846-4047902)
chr4 (310-373)||(16023572-16023635)
chr4 (380-431)||(45228872-45228923)
chr4 (306-373)||(55614217-55614283)
chr4 (386-432)||(2016090-2016136)
chr4 (386-432)||(27283658-27283704)
chr4 (314-372)||(42660144-42660202)
chr4 (312-358)||(51538346-51538392)
chr4 (308-373)||(47986048-47986113)
chr4 (386-431)||(51538433-51538478)
chr4 (309-374)||(53511227-53511292)
chr4 (306-370)||(2016165-2016228)
chr4 (309-373)||(9036474-9036538)
chr4 (380-431)||(35158500-35158552)
chr4 (309-373)||(40727723-40727787)
[»] chr2 (14 HSPs)
chr2 (314-373)||(18137299-18137358)
chr2 (300-367)||(45116774-45116841)
chr2 (309-367)||(15911481-15911539)
chr2 (309-373)||(17138046-17138110)
chr2 (310-369)||(13278394-13278453)
chr2 (318-369)||(16414025-16414076)
chr2 (313-372)||(25715890-25715949)
chr2 (318-372)||(1114501-1114555)
chr2 (308-370)||(38707593-38707655)
chr2 (313-366)||(9846976-9847029)
chr2 (308-357)||(17304588-17304637)
chr2 (312-373)||(24167093-24167154)
chr2 (314-373)||(7943112-7943169)
chr2 (314-369)||(16252738-16252791)
[»] chr5 (21 HSPs)
chr5 (309-369)||(16513973-16514033)
chr5 (309-373)||(29047391-29047455)
chr5 (310-374)||(41616386-41616450)
chr5 (299-373)||(12723359-12723433)
chr5 (307-369)||(8197104-8197166)
chr5 (303-432)||(11720236-11720358)
chr5 (312-373)||(2606358-2606419)
chr5 (308-373)||(13822447-13822512)
chr5 (309-373)||(5344108-5344172)
chr5 (314-374)||(8551274-8551334)
chr5 (308-430)||(37030554-37030689)
chr5 (308-341)||(13654679-13654712)
chr5 (312-373)||(31471836-31471897)
chr5 (380-432)||(26278822-26278874)
chr5 (307-373)||(1711585-1711651)
chr5 (299-373)||(12784842-12784916)
chr5 (309-367)||(37883125-37883183)
chr5 (308-373)||(6432777-6432842)
chr5 (309-370)||(18808677-18808738)
chr5 (312-372)||(26319868-26319928)
chr5 (312-372)||(37094246-37094306)
[»] chr3 (21 HSPs)
chr3 (308-431)||(53814648-53814784)
chr3 (305-373)||(10509597-10509665)
chr3 (17-71)||(28973665-28973719)
chr3 (312-421)||(31765512-31765634)
chr3 (308-374)||(36403054-36403120)
chr3 (312-360)||(18875737-18875785)
chr3 (309-369)||(44207959-44208019)
chr3 (305-372)||(8735734-8735801)
chr3 (305-372)||(9087975-9088042)
chr3 (310-367)||(21450535-21450592)
chr3 (309-373)||(32529503-32529567)
chr3 (310-374)||(39586272-39586336)
chr3 (380-432)||(41194020-41194072)
chr3 (308-372)||(47646649-47646713)
chr3 (304-368)||(48061874-48061938)
chr3 (306-373)||(16481090-16481156)
chr3 (319-373)||(39353013-39353067)
chr3 (307-373)||(47375094-47375160)
chr3 (308-373)||(227328-227393)
chr3 (386-431)||(39353093-39353138)
chr3 (314-367)||(41194098-41194151)
[»] chr7 (10 HSPs)
chr7 (309-373)||(46254564-46254628)
chr7 (306-373)||(26791695-26791762)
chr7 (305-371)||(14817023-14817089)
chr7 (305-371)||(15264019-15264085)
chr7 (309-373)||(43457885-43457949)
chr7 (314-373)||(35794180-35794239)
chr7 (306-373)||(38257801-38257868)
chr7 (380-433)||(25529406-25529459)
chr7 (306-355)||(29332640-29332689)
chr7 (309-373)||(7255768-7255832)
[»] chr6 (10 HSPs)
chr6 (307-373)||(9305333-9305399)
chr6 (307-373)||(31271046-31271111)
chr6 (380-433)||(9305260-9305313)
chr6 (309-370)||(31318227-31318288)
chr6 (312-373)||(34949237-34949298)
chr6 (305-372)||(480017-480083)
chr6 (309-373)||(303452-303516)
chr6 (305-361)||(16395012-16395068)
chr6 (306-374)||(29435797-29435865)
chr6 (380-432)||(31271131-31271183)
[»] scaffold0168 (1 HSPs)
scaffold0168 (308-373)||(11900-11965)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 41086119 - 41086238
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctgaattcagaccaaattgttagtgatttccggaaaata 409  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||||| ||   ||||| |||||||||||| |||||||||      
T  41086119 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaatacccctg-atctggaccagattgttagtgatatccggaaaacg 41086217  T
Q  410 aaatacggaccagatgttatg 430  Q
    |||| ||||||||||||||||    
T  41086218 aaattcggaccagatgttatg 41086238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 41090887 - 41091006
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctgaattcagaccaaattgttagtgatttccggaaaata 409  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||||| ||   ||||| |||||||||||| |||||||||      
T  41090887 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaatacccctg-atctggaccagattgttagtgatatccggaaaacg 41090985  T
Q  410 aaatacggaccagatgttatg 430  Q
    |||| ||||||||||||||||    
T  41090986 aaattcggaccagatgttatg 41091006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 433
Target Start/End: Original strand, 49851417 - 49851549
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtgatttc 400  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||||||||||||| |||             ||||| || || |||||||||||| ||    
T  49851417 ttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaataccgctggtccgaattatataattcggatcagattgttagtgatatc 49851516  T
Q  401 cggaaaataaaatacggaccagatgttatgtgc 433  Q
    |||||||  |||| |||||||||||||||||||    
T  49851517 cggaaaaagaaattcggaccagatgttatgtgc 49851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 21187207 - 21187262
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    |||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||    
T  21187207 ttacttttcccaccctgctgccttctcgcgcgccatgcaaaagttccaaaaatacc 21187262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 38860386 - 38860444
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||| |||  | |||||||||||||| ||||||||||||||||||||||||    
T  38860386 ttacttttcccaccctatttccttctcgcacgccctgcaaaatttccaaaaatacccct 38860444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 3518016 - 3517951
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| |||||||||||||||| | || |||||||||| | ||||||| ||||    
T  3518016 agactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatactcctg 3517951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 7565011 - 7564958
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    |||||||||||| |||||||||||||||| ||| |||||||| |||||||||||    
T  7565011 ttacttttcccaccctgctgccttctcgcgcgctttgcaaaaattccaaaaata 7564958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 5750226 - 5750162
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| ||||  |||||||||  |||| ||||||| |||||||||||||||||    
T  5750226 gactattacttttcccaccctgtagccttctcgggcgccctgcaaaaattccaaaaatacccctg 5750162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 11952765 - 11952719
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  11952765 attgttagtgatttgcggaaaattaaatccggaccagatgttatgtg 11952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 42883031 - 42882965
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||||| | |||||||| ||||| || | |||||||||| | ||||||||||||    
T  42883031 tagactattacttttcccaccttgctgcctcctcgcgcgtcctgcaaaatttactaaaatacccctg 42882965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 44757969 - 44757907
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||||||| | |||||||||||||| |||| ||||||| || || ||||||||||    
T  44757969 actattacttttcccaccatgctgccttctcgcgcgccctgcaaaaatttcataaatacccct 44757907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 14587783 - 14587722
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||||||||| |||||||||||||| | | || |||||||||| | |||||||||    
T  14587783 gactattacttttcccaccctgctgccttctcacgcaccctgcaaaatttactaaaataccc 14587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 18271967 - 18272032
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||||  |||||| ||||| ||||||||    
T  18271967 tttagactattgcttttcccaccctgttgccttctcgcgcgcccagcaaaaattccataaataccc 18272032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 18276621 - 18276686
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||||  |||||| ||||| ||||||||    
T  18276621 tttagactattgcttttcccaccctgttgccttctcgcgcgcccagcaaaaattccataaataccc 18276686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 29947112 - 29947055
Alignment:
Q  313 attacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||||| |||| ||||||||||| |||| ||||||| ||||| ||||||||    
T  29947112 attacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaataccc 29947055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 30828859 - 30828912
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaa 365  Q
    ||||||||||||||||||| || ||||||||  ||| |||||||||||||||||    
T  30828859 tattacttttcccatcctgttgacttctcgcgtgccctgcaaaatttccaaaaa 30828912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 52632701 - 52632657
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatg 430  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||    
T  52632701 attgttagtgatttccggaaaattaaattcggaccagatattatg 52632657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 29961095 - 29961158
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||| |||||||| |||||||||||||||| | || ||| |||||| | |||||||||||    
T  29961095 gactattatttttcccaccctgctgccttctcgcgcaccatgcgaaatttactaaaatacccct 29961158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 50890246 - 50890305
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||| | |||||||||||||| |||||| ||||||| || ||||||||| ||||    
T  50890246 ttacttttcctaccctgctgccttctcacacgccctgcaaaaatttcaaaaatactcctg 50890305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 3475703 - 3475633
Alignment:
Q  304 atttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    ||||||||||||||||||  || |||| |||||||||||  ||| | ||||| ||||| ||||||||||||    
T  3475703 atttagactattacttttttcaccctgttgccttctcgcgtgccctacaaaaattccataaatacccctga 3475633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 3517925 - 3517880
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    |||||||||||||||||||||   |||| |||||||||||||||||    
T  3517925 attgttagtgatttccggaaacagaaattcggaccagatgttatgt 3517880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 11952850 - 11952794
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    |||||||||||||||||| |||||   ||||| || |||| |||||||||||||||||||    
T  11952850 agactattacttttcccaccctgc---cttctagctcgccctgcaaaatttccaaaaata 11952794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 12700893 - 12700848
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    |||||||||||||||||||||   |||| |||||||||||||||||    
T  12700893 attgttagtgatttccggaaacagaaatccggaccagatgttatgt 12700848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 14587693 - 14587648
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    |||||||||||||||||||||   |||| |||||||||||||||||    
T  14587693 attgttagtgatttccggaaacagaaatccggaccagatgttatgt 14587648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 12700985 - 12700925
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    ||||||||||||||| |||| ||||||||| |||||  ||| |||||||||| | ||||||    
T  12700985 tagactattactttttccattctgctgcctcctcgcgtgccctgcaaaatttactaaaata 12700925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 22335334 - 22335270
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||| ||||||||||| |||  ||||||||||| |||| ||||||| ||| | |||||||||||    
T  22335334 gactactacttttcccaccctattgccttctcgcgcgccctgcaaaaattctataaatacccctg 22335270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 29961179 - 29961231
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    ||||| |||||||||||||||||||||   ||||  |||||||||||||||||    
T  29961179 gaccagattgttagtgatttccggaaacagaaatctggaccagatgttatgtg 29961231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 50262337 - 50262297
Alignment:
Q  332 tgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  50262337 tgccttctcacgcgccctgcaaaatttccaaaaatacccct 50262297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 430
Target Start/End: Original strand, 20091264 - 20091399
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagt 394  Q
    ||||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||||||||             ||| | ||||| |||||||||    
T  20091264 agactattacttttcacaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagt 20091363  T
Q  395 gatttccggaaaataaaatacggaccagatgttatg 430  Q
    |||||||||||||| |||| ||||||||||||||||    
T  20091364 gatttccggaaaattaaatccggaccagatgttatg 20091399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 29544103 - 29544168
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||    
T  29544103 agactattacttttcccaccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctg 29544168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 432
Target Start/End: Complemental strand, 13546625 - 13546487
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgtta 392  Q
    |||||||||||| ||||| |||||| ||  ||||||| |||| |||||||||||||||||||||||||             ||| ||||||| |||||||    
T  13546625 ttagactattacctttcc-atcctggtggtttctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgtta 13546527  T
Q  393 gtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  13546526 gtgatttccggaaaattaaatccggaccagatgttatgtg 13546487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 432
Target Start/End: Original strand, 13677848 - 13677986
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgtta 392  Q
    |||||||||||| ||||| |||||| ||  ||||||| |||| |||||||||||||||||||||||||             ||| ||||||| |||||||    
T  13677848 ttagactattacctttcc-atcctggtggtttctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgtta 13677946  T
Q  393 gtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  13677947 gtgatttccggaaaattaaatccggaccagatgttatgtg 13677986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 43098980 - 43098916
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccc 371  Q
    ||||||||||||||||||| |||||||||||||||| | || | |||||||||||||||||||||    
T  43098980 tagactattacttttcccaccctgctgccttctcgcgcacccttcaaaatttccaaaaatacccc 43098916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 37098094 - 37098157
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    |||| |||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||    
T  37098094 tagaatattacttttcccaccctgttgccttctcgcgcgccctgcaaaatttccaaaaataccc 37098157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 12165 - 12095
Alignment:
Q  303 aatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||| |||||||||||||||| |||| ||||||||||| |||| ||||||| ||||| |||||||||||    
T  12165 aatttaaactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacccctg 12095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 6346999 - 6347063
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||| | | |||||||||||||||| |||| |||||||||| | ||||||||||||    
T  6346999 gactattactttttctaccctgctgccttctcgcgcgccctgcaaaatttactaaaatacccctg 6347063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 431
Target Start/End: Complemental strand, 39260715 - 39260597
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctgaattcagaccaaattgttagtgatttccggaaaa 407  Q
    ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||   ||||||   |  ||| | ||||| |||||||||| ||||||||||     
T  39260715 agactattacttttcccatcctgctacctcctcgcgcgcc-tgcaaaatttattaaaata---cataatccggaccagattgttagtg-tttccggaaac 39260621  T
Q  408 taaaatacggaccagatgttatgt 431  Q
      |||| |||||||||||||||||    
T  39260620 agaaatccggaccagatgttatgt 39260597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 40105689 - 40105624
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||| ||| |||||||||| ||||| |||| ||||||||||   ||||||||||||    
T  40105689 agactattactttttccaccctgctgcctcctcgcgcgccctgcaaaatttattaaaatacccctg 40105624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 586841 - 586785
Alignment:
Q  314 ttacttttccc-atcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    ||||||||||| | |||||||  |||||||||||| |||||||||||||||||||||    
T  586841 ttacttttccccaccctgctgtattctcgcacgccctgcaaaatttccaaaaatacc 586785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 32337516 - 32337572
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    |||||||||||| |||||||| ||||||   ||| ||||||||||||||||||||||    
T  32337516 ttacttttcccaccctgctgctttctcgtgtgccctgcaaaatttccaaaaataccc 32337572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 42280336 - 42280399
Alignment:
Q  303 aatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaat 366  Q
    |||| ||||||||||||||||||||||   |||||||| | |||| || |||||||||||||||    
T  42280336 aattaagactattacttttcccatcctatggccttctcccgcgccctgtaaaatttccaaaaat 42280399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 43098896 - 43098842
Alignment:
Q  378 cagaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtgc 433  Q
    ||||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||    
T  43098896 cagaccagattgttagtgatttcc-gaaaattaaatctggaccagatgttatgtgc 43098842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 36830557 - 36830598
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgc 346  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  36830557 tttagactattacttttcccatcctatggccttctcgcacgc 36830598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 433
Target Start/End: Original strand, 6963193 - 6963295
Alignment:
Q  332 tgccttctcgcacgccttgcaaaatttccaaaaatacccctg-aattcagaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatg 430  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| |||||||||||||| | | ||||  ||| ||||||||||||||||    
T  6963193 tgccttctcgcacgccctgcaaaatttccaaaaatacccctgtaatccggaccagattgttagtgattttcaggaaattgaatccggaccagatgttatg 6963292  T
Q  431 tgc 433  Q
    |||    
T  6963293 tgc 6963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 433
Target Start/End: Complemental strand, 38551697 - 38551565
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtgatttc 400  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||             ||| | ||||| ||||||||||||||     
T  38551697 ttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtgatttt 38551598  T
Q  401 cggaaaataaaatacggaccagatgttatgtgc 433  Q
    |||||||  ||||||||||||||||||||||||    
T  38551597 cggaaaacgaaatacggaccagatgttatgtgc 38551565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 35158406 - 35158480
Alignment:
Q  299 ttacaatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||| |||||||||||||||||||||| |||||||||| ||||| |||| |||||||||| | ||||||||||||    
T  35158406 ttactatttagactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctg 35158480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 35320334 - 35320265
Alignment:
Q  304 atttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| ||| | || ||||||||||| |||| |||||||||||||||||||||||||    
T  35320334 atttagactattacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctg 35320265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 49374021 - 49374086
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||    
T  49374021 agactattacttttcccaccctgctaccttctcgcgcgccctgcaaaattttcaaaaatacccctg 49374086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 28311325 - 28311261
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| |||||||||||||||| || | ||||||||||| |||| ||||||||    
T  28311325 gactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttcaaaaattacccctg 28311261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 15543281 - 15543214
Alignment:
Q  303 aatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    |||| ||| |||||||||||||| | |||||||||||||| |||| | ||||||||||||||||||||    
T  15543281 aattaagaatattacttttcccaccttgctgccttctcgcgcgccctacaaaatttccaaaaataccc 15543214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 45458037 - 45458100
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||||||||||| |||||||||| |||||  |||||||||||||| | |||||||||    
T  45458037 tagactattacttttcccaccctgctgcctcctcgcgtgccttgcaaaatttactaaaataccc 45458100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 433
Target Start/End: Original strand, 45924302 - 45924440
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtg 395  Q
    ||||||||||||| |||  ||||||||||||||| |||| ||||||||||  |||||||||||||             ||| | ||||||||||||||||    
T  45924302 gactattactttttccactctgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtg 45924401  T
Q  396 a-tttccggaaaataaaatacggaccagatgttatgtgc 433  Q
    | ||||||||| || |||| |||||||||||||||||||    
T  45924402 attttccggaacattaaattcggaccagatgttatgtgc 45924440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 433
Target Start/End: Complemental strand, 4190308 - 4190171
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtg 395  Q
    ||||||||||||||||| |||| || ||||| || |||| | |||||||||||||||||||||||             ||| | ||||| |||||||| |    
T  4190308 gactattacttttcccaccctgttgtcttcttgcgcgcccttcaaaatttccaaaaatacccctggttcggattatataatcctgaccagattgttagcg 4190209  T
Q  396 atttccggaaaataaaatacggaccagatgttatgtgc 433  Q
    ||||||||||||| |||| ||||||| |||||||||||    
T  4190208 atttccggaaaattaaattcggaccaaatgttatgtgc 4190171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 433
Target Start/End: Original strand, 16451638 - 16451771
Alignment:
Q  313 attacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtgattt 399  Q
    ||||||||||||| |||||||||||||||| |||  |||||||||| ||||||||||| ||             ||| | ||||| ||||||||||||||    
T  16451638 attacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtgattt 16451737  T
Q  400 ccggaaaataaaatacggaccagatgttatgtgc 433  Q
     ||||||| ||||| | |||||||||||||||||    
T  16451738 tcggaaaacaaaatccagaccagatgttatgtgc 16451771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 52417373 - 52417308
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||| | ||||||||||||||||  ||| |||||||||| | ||||||||||||    
T  52417373 agactattacttttcctaccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctg 52417308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 45029464 - 45029397
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    ||||||||||||||||| ||| |||||||||||||| | | || |||||||||| | |||||||||||    
T  45029464 tttagactattactttttccaccctgctgccttctcccgcaccctgcaaaatttactaaaatacccct 45029397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 45228787 - 45228849
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    |||||||||||||| ||| ||||||| |||||||| |||| |||||||||| | |||||||||    
T  45228787 agactattactttttccaccctgctgtcttctcgcgcgccctgcaaaatttactaaaataccc 45228849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 45659942 - 45659880
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    ||||| ||||||||||||| || ||||||||  ||||||||||| ||| ||||||||||||||    
T  45659942 tattatttttcccatcctgttgtcttctcgcgtgccttgcaaaaattctaaaaatacccctga 45659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 4047846 - 4047902
Alignment:
Q  318 ttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    |||||||| | ||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  4047846 ttttcccaccttgctgccttcttgcacgccctgcaaaatttctaaaaatatccctga 4047902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 16023572 - 16023635
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||| ||||||| |||| ||||||| | || |||||||||| | ||||||||||||    
T  16023572 actattactttttccatcctactgcgttctcgcgcaccctgcaaaatttactaaaatacccctg 16023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 45228872 - 45228923
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    ||||| |||||||||||||| ||||||  ||||| |||||||||||||||||    
T  45228872 gaccagattgttagtgattttcggaaacaaaaatccggaccagatgttatgt 45228923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 55614283 - 55614217
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| | |||| || |||||||| ||||||| |||| ||||| |||||||||||    
T  55614283 ttagactattacttttcc-accctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctg 55614217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 2016136 - 2016090
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    |||||||||||| |||||||||  |||| ||||||||||||||||||    
T  2016136 attgttagtgatatccggaaaacgaaatccggaccagatgttatgtg 2016090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 27283704 - 27283658
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    ||||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  27283704 attgttaatgatttccgaaaaattaaatccggaccagatgttatgtg 27283658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 42660144 - 42660202
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||| |||  ||||||||||| |||| || ||||||| |||||||||||||    
T  42660144 ttacttttcccaccctattgccttctcgcgcgccctgtaaaattttcaaaaatacccct 42660202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 51538346 - 51538392
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaattt 358  Q
    ||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  51538346 tattatttttcccaccctgctgccttctcgcatgccctgcaaaattt 51538392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 47986113 - 47986048
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||| |||||||||||||||||  || ||||||| |||| || |||| ||||| |||||||||||    
T  47986113 agactgttacttttcccatcctgtggctttctcgcgcgccctggaaaaattccataaatacccctg 47986048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 51538433 - 51538478
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    |||||||||||||||||||||   |||| |||||||||||||||||    
T  51538433 attgttagtgatttccggaaacagaaatccggaccagatgttatgt 51538478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 53511227 - 53511292
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    |||||||| |||||||| |||  ||| |||||||||||||||||||| ||||| ||| || |||||    
T  53511227 gactattatttttcccaccctcttgcattctcgcacgccttgcaaaaattccataaacactcctga 53511292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 2016228 - 2016165
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||| |||||||||| ||||||||||||| || |||| | || ||||| |||||||||||    
T  2016228 ttagactatcacttttcccaccctgctgccttcttgcgcgcc-tacataatttacaaaaataccc 2016165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 9036538 - 9036474
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||| ||| ||  |||||| ||||| |||| |||||||||| | ||||||||||||    
T  9036538 gactattactttttccacccgactgcctcctcgcgcgccctgcaaaatttactaaaatacccctg 9036474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 35158500 - 35158552
Alignment:
Q  380 gaccaaattgttagtgatttccggaaa-ataaaatacggaccagatgttatgt 431  Q
    ||||| ||||||||| ||||||||||| | ||||| |||||||||||||||||    
T  35158500 gaccagattgttagttatttccggaaacagaaaattcggaccagatgttatgt 35158552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 40727723 - 40727787
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||| |||||||| || |||||||||| ||||||  || |||||||||| | ||||||||||||    
T  40727723 gactactacttttctcaccctgctgcctcctcgcataccctgcaaaatttactaaaatacccctg 40727787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 18137299 - 18137358
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  18137299 ttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacccctg 18137358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 45116774 - 45116841
Alignment:
Q  300 tacaatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    |||| ||||||||||||||||||||| | ||||| |||||||| |||| |||||||||| | ||||||    
T  45116774 tacattttagactattacttttcccaccatgctgtcttctcgcgcgccctgcaaaatttactaaaata 45116841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 15911481 - 15911539
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    ||||||||||||||||| |||||||||||||||| | || |||||||||| | ||||||    
T  15911481 gactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaata 15911539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 17138110 - 17138046
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| |||||||||| ||||| |||| |  ||||||| | ||||||||||||    
T  17138110 gactattacttttcccaccctgctgcctcctcgcgcgccctataaaatttactaaaatacccctg 17138046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 13278394 - 13278453
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    |||||||||||| ||| ||||||| |||||||| |||| || ||||||| ||||||||||    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacc 13278453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 16414025 - 16414076
Alignment:
Q  318 ttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    |||||||| ||||||| |||||| | |||||||||||| |||||||||||||    
T  16414025 ttttcccaccctgctgtcttctcacgcgccttgcaaaaattccaaaaatacc 16414076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 25715949 - 25715890
Alignment:
Q  313 attacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    ||||||||| ||| |||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  25715949 attactttttccaccctgttgccttctcgtgcgccttgtaaaatttccaaaaatgcccct 25715890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 1114501 - 1114555
Alignment:
Q  318 ttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||| ||| || ||||||||| |||| | ||||||||||||||||||||||    
T  1114501 ttttcccaccctactaccttctcgcgcgccctacaaaatttccaaaaatacccct 1114555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 38707655 - 38707593
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||||||||||  ||||||||||||||| | || || ||||||| | |||||||||    
T  38707655 agactattacttttcccactctgctgccttctcgcgcaccctgaaaaatttactaaaataccc 38707593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 9846976 - 9847029
Alignment:
Q  313 attacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaat 366  Q
    ||||||||||||| |||  ||||||||||| |||| || |||||||||||||||    
T  9846976 attacttttcccaccctattgccttctcgcgcgccctgtaaaatttccaaaaat 9847029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 17304588 - 17304637
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatt 357  Q
    ||||||||| |||| ||| |||||||||||||||| |||| |||||||||    
T  17304588 agactattattttttccaccctgctgccttctcgcgcgccctgcaaaatt 17304637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 24167093 - 24167154
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||  ||||||||||||| | || | ||||||| || ||||||||||||||    
T  24167093 tattacttttcccactctgctgccttctcacgcgtcctgcaaaaatttcaaaaatacccctg 24167154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 7943169 - 7943112
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||| | |||||||||||||  |||| |||||||||| | ||||||||||||    
T  7943169 ttacttttcccaccgtgctgccttctcg--cgccctgcaaaatttactaaaatacccctg 7943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 16252791 - 16252738
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    |||||||||||| |||||||||||| ||  |||||||||||| || ||||||||||    
T  16252791 ttacttttcccaccctgctgccttcacg--cgccttgcaaaaatttcaaaaatacc 16252738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 16514033 - 16513973
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  16514033 gactattacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacc 16513973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 29047455 - 29047391
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| |||| ||||||||||| |||| ||||||| |||||||||||||||||    
T  29047455 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccaaaaatacccctg 29047391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 41616450 - 41616386
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    |||||||||||||||||||||||||||||||   |||||||||||| |||||| |||||||||||    
T  41616450 actattacttttcccatcctgctgccttctcatgcgccttgcaaaaattccaataatacccctga 41616386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 12723359 - 12723433
Alignment:
Q  299 ttacaatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||  |||||||||||||||||| |||||||||| ||||| |||| |||||||||| | ||||||||||||    
T  12723359 ttacaatgaagactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctg 12723433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 8197104 - 8197166
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    ||||||||||||||||||| || |||||||||||||||||  |||||||||| | ||||||||    
T  8197104 tagactattacttttcccaccccgctgccttctcgcacgctctgcaaaatttactaaaatacc 8197166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 432
Target Start/End: Complemental strand, 11720358 - 11720236
Alignment:
Q  303 aatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctgaattcagaccaaattgttagtgatttccg 402  Q
    |||||||| | |||||||||||| ||| ||||||| |||| |||| |||||||||| |||||||| |||||      ||||| |||||||||| ||| ||    
T  11720358 aatttagagttttacttttcccaccctactgccttttcgcgcgccctgcaaaatttacaaaaatatccctg------gaccagattgttagtgcttt-cg 11720266  T
Q  403 gaaaataaaatacggaccagatgttatgtg 432  Q
    ||||| |||||  ||| |||||||||||||    
T  11720265 gaaaacaaaatttggatcagatgttatgtg 11720236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 2606419 - 2606358
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||| | |  ||||||||||| |||||| |||||||||||||||||||||||    
T  2606419 tattacttttcccaccttaatgccttctcgcgcgccttccaaaatttccaaaaatacccctg 2606358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 13822512 - 13822447
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| | |||||||| ||||| |||| |||||||||| | ||||||||||||    
T  13822512 agactattacttttcccaccttgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctg 13822447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 5344172 - 5344108
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| | || ||||||||||| |||| ||||||| ||||| |||||||||||    
T  5344172 gactattacttttcccaccatgttgccttctcgcgcgccctgcaaaaattccataaatacccctg 5344108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 8551334 - 8551274
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    |||||||||||| ||||||||||||| ||||||| ||||||| || |||||||| ||||||    
T  8551334 ttacttttcccaccctgctgccttcttgcacgccctgcaaaaatttcaaaaatatccctga 8551274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 430
Target Start/End: Complemental strand, 37030689 - 37030554
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagt 394  Q
    |||||||||||||| ||| | ||||||||||||||  | | |||||||||||||||| ||||||||             ||| | ||||| |||||||||    
T  37030689 agactattactttttccaccatgctgccttctcgcgtgtcctgcaaaatttccaaaagtacccctggtccggattatataatccggaccagattgttagt 37030590  T
Q  395 gatttccggaaaataaaatacggaccagatgttatg 430  Q
    ||| ||||||||| ||||| ||||||||||||||||    
T  37030589 gatatccggaaaacaaaatccggaccagatgttatg 37030554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 13654679 - 13654712
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcg 341  Q
    ||||||||||||||||||||||||||||||||||    
T  13654679 agactattacttttcccatcctgctgccttctcg 13654712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 31471897 - 31471836
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||  ||||||||||||||| ||||||| |||| ||||| ||||| |||||    
T  31471897 tattacttttcccactctgctgccttctcgcgcgccttgaaaaaattccacaaatatccctg 31471836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 26278822 - 26278874
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    ||||| |||||||||||| |||||||||  |||| ||||||||||||||||||    
T  26278822 gaccagattgttagtgatatccggaaaacgaaattcggaccagatgttatgtg 26278874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 1711651 - 1711585
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||||| | || ||||||||| | |||| ||||||| || || |||||||||||    
T  1711651 tagactattacttttcccaccatgttgccttctcacgcgccctgcaaaaatttcataaatacccctg 1711585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 12784842 - 12784916
Alignment:
Q  299 ttacaatttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||  |||||||||||||||||| |||||||||| ||||| | || ||||  |||| | ||||||||||||    
T  12784842 ttacaatgaagactattacttttcccaccctgctgcctcctcgcgcaccctgcaccatttactaaaatacccctg 12784916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 37883125 - 37883183
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    ||||||||||||| ||| |||  ||||||||||| |||| |||||||||| ||||||||    
T  37883125 gactattactttttccaccctattgccttctcgcgcgccctgcaaaattttcaaaaata 37883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 6432842 - 6432777
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| |||  ||||||||||| || | ||||||| || ||||| ||||||||    
T  6432842 agactattacttttcccaccctcttgccttctcgcgcgtcctgcaaaaatttcaaaactacccctg 6432777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 18808677 - 18808738
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||||||||||||| | |||||||| ||| | |||| |||||||||| | |||||||||    
T  18808677 gactattacttttcccaccatgctgcctcctcacgcgccctgcaaaatttactaaaataccc 18808738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 26319928 - 26319868
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||||| |||| || |||||||   |||||| ||||||||||||||| |||||    
T  26319928 tattacttttcccaccctgttgacttctcgtgtgccttgtaaaatttccaaaaatgcccct 26319868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 37094246 - 37094306
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||||| |||| || |||||||| |||| || ||||||| ||||||| |||||    
T  37094246 tattacttttcccaccctgttgacttctcgcgcgccctgtaaaattttcaaaaatgcccct 37094306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 431
Target Start/End: Original strand, 53814648 - 53814784
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagt 394  Q
    |||||||||||||||||| |||||||||||||||| || | |||||||||| | |||||| |||||             ||||||||||| |||||||||    
T  53814648 agactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttactaaaataaccctggtccgggttacataattcagaccagattgttagt 53814747  T
Q  395 gatttccggaaaataaaatacggaccagatgttatgt 431  Q
    ||||||||||||   |||| |||||||||||||||||    
T  53814748 gatttccggaaacagaaatgcggaccagatgttatgt 53814784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 10509665 - 10509597
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||| | ||||||| ||||    
T  10509665 tttagactattactttttccaccctgctgccttctcgcgccccttgcaaaatttactaaaatactcctg 10509597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 28973665 - 28973719
Alignment:
Q  17 agatttttcattatatagtttgtttctcattgtgtgttgggatcgttccccttct 71  Q
    ||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||    
T  28973665 agatttttcattatatattttgtttctcatcgtgtgttgggatagttccacttct 28973719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 421
Target Start/End: Complemental strand, 31765634 - 31765512
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg-------------aattcagaccaaattgttagtgatt 398  Q
    |||||||||| ||||| |||||||||||||| |||| |||||||||| |||||||| |||||             ||||| |||||||||||||||||||    
T  31765634 tattactttttccatcttgctgccttctcgcgcgccctgcaaaattttcaaaaatatccctggtccggattatataattcggaccaaattgttagtgatt 31765535  T
Q  399 tccggaaaataaaatacggacca 421  Q
    || ||||||| |||| |||||||    
T  31765534 tctggaaaatgaaatccggacca 31765512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 36403120 - 36403054
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    ||||||||||||||| || |||||||||| ||||| |||| |||||||||| | |||||||||||||    
T  36403120 agactattacttttctcaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctga 36403054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 18875737 - 18875785
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttcc 360  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  18875737 tattacttttcccaccctgctgccttctcgcacgccctccaaaatttcc 18875785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 44208019 - 44207959
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacc 369  Q
    ||||||||||||||||| |||| ||||||||||| |||| ||||||| ||||| |||||||    
T  44208019 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacc 44207959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 8735801 - 8735734
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||| |||||||||||||| |||| || |||||||| |||| || ||||||||||||||| |||||    
T  8735801 tttagagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgcccct 8735734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 9088042 - 9087975
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||| |||||||||||||| |||| || |||||||| |||| || ||||||||||||||| |||||    
T  9088042 tttagagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgcccct 9087975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 21450592 - 21450535
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    |||||||||||| ||| |||| ||||||||||| |||||||||||| ||||| |||||    
T  21450592 actattactttttccaccctgttgccttctcgcgcgccttgcaaaaattccataaata 21450535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 32529503 - 32529567
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||| ||| ||||||||||||||||  ||| || ||||||| | ||||||||||||    
T  32529503 gactattactttttccaccctgctgccttctcgcgtgccctgtaaaatttactaaaatacccctg 32529567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 39586272 - 39586336
Alignment:
Q  310 actattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    |||||||||||||||| |||  ||||||||||| |||| |||||||||| | |||||| ||||||    
T  39586272 actattacttttcccaccctattgccttctcgcgcgccctgcaaaattttctaaaataaccctga 39586336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 41194072 - 41194020
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    ||||| ||||||||||||||||||||||  ||||  |||||||||||||||||    
T  41194072 gaccagattgttagtgatttccggaaaacgaaatcaggaccagatgttatgtg 41194020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 47646649 - 47646713
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||||||||| | |||||||||||||  | || |||||||||| | |||||||||||    
T  47646649 agactattacttttcccaccatgctgccttctcgtgcaccgtgcaaaatttactaaaatacccct 47646713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 48061874 - 48061938
Alignment:
Q  304 atttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatac 368  Q
    |||| ||||||||||||||||| |||  || ||||| || |||||||||||||||||| ||||||    
T  48061874 atttcgactattacttttcccaccctattgtcttcttgcgcgccttgcaaaatttccataaatac 48061938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 16481090 - 16481156
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||| | |||| || |||||||| ||||||| |||| ||||| |||||||||||    
T  16481090 ttagactattacttttcc-accctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctg 16481156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 39353013 - 39353067
Alignment:
Q  319 tttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||| ||||||||||| |||| |||| || ||||||| ||||||||||||||    
T  39353013 tttcccaccctgctgccttatcgcgcgccctgtaaaattttcaaaaatacccctg 39353067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 47375160 - 47375094
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||||| |||| ||||||||||| |||| | ||||| || || |||||| ||||    
T  47375160 tagactattacttttcccaccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctg 47375094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 227328 - 227393
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||| |||||||||||| | |||||||| |||||  |||||||||||||| | ||||||| ||||    
T  227328 agacttttacttttcccaccatgctgcctcctcgcgtgccttgcaaaatttactaaaatactcctg 227393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 39353093 - 39353138
Alignment:
Q  386 attgttagtgatttccggaaaataaaatacggaccagatgttatgt 431  Q
    |||||||||||||| || ||||| |||| |||||||||||||||||    
T  39353093 attgttagtgattttcgaaaaattaaatccggaccagatgttatgt 39353138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 41194151 - 41194098
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaata 367  Q
    |||||||||||| |||||||||||||||| ||||  ||||||||| | ||||||    
T  41194151 ttacttttcccaccctgctgccttctcgcgcgcccggcaaaatttactaaaata 41194098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 46254564 - 46254628
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||||||||| | ||||||||||||    
T  46254564 gactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctg 46254628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 26791695 - 26791762
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||| |||||||| |||| ||||||||||| || | ||||||| ||||| |||||||||||    
T  26791695 ttagactattatttttcccaccctgttgccttctcgcgcgtcctgcaaaaattccataaatacccctg 26791762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 14817089 - 14817023
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccc 371  Q
    |||||| ||||||||||  || ||| |||||||||||| || | |||||||||||||||||||||||    
T  14817089 tttagaatattacttttttcaccctactgccttctcgcgcgtcctgcaaaatttccaaaaatacccc 14817023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 15264085 - 15264019
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccc 371  Q
    |||||| ||||||||||  || ||| |||||||||||| || | |||||||||||||||||||||||    
T  15264085 tttagaatattacttttttcaccctactgccttctcgcgcgtcctgcaaaatttccaaaaatacccc 15264019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 43457885 - 43457949
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||| || | |||||||||||| | |||| |||||||||| ||||||||| ||||    
T  43457885 gactattacttttcacaccttgctgccttctcacgcgccctgcaaaattttcaaaaatactcctg 43457949  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 35794180 - 35794239
Alignment:
Q  314 ttacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||| | |||||| |||||    
T  35794180 ttacttttcccaccctactgccttctcgcacgacctgcaaaatttactaaaataaccctg 35794239  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 38257868 - 38257801
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||| ||| |||| | |||||||||  ||| ||||||| ||||| |||||||||||    
T  38257868 ttagactattactttttccaccctgtttccttctcgcgtgccctgcaaaaattccataaatacccctg 38257801  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 25529459 - 25529406
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtgc 433  Q
    ||||| |||||||||||||||||||| |  |||| |||||||||| ||||||||    
T  25529459 gaccagattgttagtgatttccggaatacgaaatccggaccagatattatgtgc 25529406  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 29332689 - 29332640
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaa 355  Q
    |||||||||||||||||||| | || ||||||||||| |||| |||||||    
T  29332689 ttagactattacttttcccaccttgttgccttctcgcgcgccctgcaaaa 29332640  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 7255832 - 7255768
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||||||   || ||||||||||| |||  ||||||| ||||| |||||||||||    
T  7255832 gactattacttttcccactttgttgccttctcgcgcgctctgcaaaaattccataaatacccctg 7255768  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 9305399 - 9305333
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||| |||| ||| | |||| |||||||||||||| || ||||||||||||||||||||||    
T  9305399 tagactattattttttccaccatgctaccttctcgcacgccctgtaaaatttccaaaaatacccctg 9305333  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 31271046 - 31271111
Alignment:
Q  307 tagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||| |||||||||||||| |||||||||||||||| |||| |||||||||| | |||||| |||||    
T  31271046 tagattattacttttccca-cctgctgccttctcgcgcgccctgcaaaatttactaaaataaccctg 31271111  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 9305313 - 9305260
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtgc 433  Q
    ||||| ||||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  9305313 gaccagattgttagtgataaccggaaaattaaatacggatcagatgttatgtgc 9305260  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 31318227 - 31318288
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaataccc 370  Q
    ||||||| ||||||||| | ||||||||||||||  ||| |||||||||||| |||||||||    
T  31318227 gactatttcttttcccaccatgctgccttctcgcgtgccctgcaaaatttccgaaaataccc 31318288  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 34949237 - 34949298
Alignment:
Q  312 tattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    |||||||||||||| |||| |||||||||||  ||| ||||||| ||||| |||||||||||    
T  34949237 tattacttttcccaccctgttgccttctcgcgtgccctgcaaaagttccataaatacccctg 34949298  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 480017 - 480083
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccct 372  Q
    |||||||||||| |||||||| | || ||||||||||| |||| ||||||| ||||| ||||||||||    
T  480017 tttagactattatttttcccaccatgttgccttctcgcgcgcc-tgcaaaaattccataaatacccct 480083  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 303452 - 303516
Alignment:
Q  309 gactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||||||| ||||||| || ||||| |  | |||||||||| | ||||||||||||    
T  303452 gactattacttttcccaccctgctgtctcctcgcgcatcctgcaaaatttactaaaatacccctg 303516  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 16395012 - 16395068
Alignment:
Q  305 tttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttcca 361  Q
    |||||| ||||| |||||||||||| |||||||||||| ||||  |||||| |||||    
T  16395012 tttagattattatttttcccatcctactgccttctcgcgcgcccagcaaaaattcca 16395068  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 29435797 - 29435865
Alignment:
Q  306 ttagactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctga 374  Q
    ||||| ||||||||||| || |||| ||||||||||| |||  ||||||| || || ||||||||||||    
T  29435797 ttagaatattacttttctcaccctgttgccttctcgcgcgctctgcaaaaatttcataaatacccctga 29435865  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 31271131 - 31271183
Alignment:
Q  380 gaccaaattgttagtgatttccggaaaataaaatacggaccagatgttatgtg 432  Q
    ||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  31271131 gaccagattgttagtgatttccgaaaacagaaatccggaccagatgttatgtg 31271183  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 11900 - 11965
Alignment:
Q  308 agactattacttttcccatcctgctgccttctcgcacgccttgcaaaatttccaaaaatacccctg 373  Q
    ||||||||||||| | || | || ||||||||||| |||| ||||||| |||||||| ||||||||    
T  11900 agactattactttcctcaccttgatgccttctcgcgcgccctgcaaaaattccaaaattacccctg 11965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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