View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4701_low_7 (Length: 304)
Name: NF4701_low_7
Description: NF4701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4701_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 38707661 - 38707388
Alignment:
| Q |
20 |
taccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707661 |
taccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaag |
38707562 |
T |
|
| Q |
120 |
attttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcgaatctc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38707561 |
attttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcaaatctc |
38707462 |
T |
|
| Q |
220 |
atcaatcctctctttctctttgttatactgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
38707461 |
atcaatcctctctttctctttgttatactgcatcttcagatgtcgaagcttgtctcttaaattttcaagttctt |
38707388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 10045870 - 10045741
Alignment:
| Q |
19 |
ataccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaa |
118 |
Q |
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||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
10045870 |
ataccggtccatcggctaacaacctcagcaatttgatctggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcagtgctaccttcaa |
10045771 |
T |
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| Q |
119 |
gattttttattgcattttccaccttttcaa |
148 |
Q |
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| T |
10045770 |
gattttttattgcattttccacctcttcaa |
10045741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 10045708 - 10045561
Alignment:
| Q |
148 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtat--gtttcagccttcgaatctcatcaatcctctctttctctttgttat |
245 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
10045708 |
agatcataccgcctctcagcctcttgtagtgcaaagaggagctcttcacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatat |
10045609 |
T |
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| Q |
246 |
actgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
293 |
Q |
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||| |||||||||| | ||||| |||||||||||||| |||||||||| |
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| T |
10045608 |
acttcatcttcagaggctgaagcttgtctcttaaattgtcaagttctt |
10045561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 45467561 - 45467431
Alignment:
| Q |
148 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctctttgttat |
245 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45467561 |
agatcataccgcctctctgcctcctgtagtgcaaagaggagctcttcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactat |
45467462 |
T |
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| Q |
246 |
actgcatcttcagatgttgaagtttgtctct |
276 |
Q |
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||| |||||||||| ||||||| |||||||| |
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| T |
45467461 |
acttcatcttcagaggttgaagcttgtctct |
45467431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 45467723 - 45467594
Alignment:
| Q |
19 |
ataccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaa |
118 |
Q |
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||||| ||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||| ||||||||||||||||||| |
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| T |
45467723 |
ataccagtccatcggctaacaacctcggctatttggtccggtccaactgtttccgtcaacattaagttctcatccgtgttcccatcagtgctaccttcaa |
45467624 |
T |
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| Q |
119 |
gattttttattgcattttccaccttttcaa |
148 |
Q |
| |
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||||||| |||||| ||||||||| ||||| |
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| T |
45467623 |
gatttttaattgcagtttccacctcttcaa |
45467594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 42450316 - 42450408
Alignment:
| Q |
150 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctcttt |
240 |
Q |
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||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| ||||||||||||||||| |||||||||| |
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| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
42450408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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