View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4702-Insertion-1 (Length: 1075)
Name: NF4702-Insertion-1
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 25952724 - 25952432
Alignment:
| Q |
12 |
gaagttatgattttgtacaccaaaatgatggtaagaaaataaatattattatttagattgtcttcttcactattaatttagaaggtataataatggaatg |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25952724 |
gaagttatgattttgtactccaaaatgatggtaagaaaataaatattattatttagattgtcttcttccctattaatttagaaggtataataatggaatg |
25952625 |
T |
|
| Q |
112 |
caattctagaatatcataccttctttctaaccctactagctttaaaaataacttttataataattgagtcgaaaacaaattttaacataaacctatgatt |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
25952624 |
caattctagaatatcataccgtctttctaaccctactagctttaaaaataactttta---taattgagtcgaatacaaattttaacataagcctatgatt |
25952528 |
T |
|
| Q |
212 |
atatttttatgtgataaaattgctactctatcattttccaacactttaatttacatttcctaaccttttaattagttttatagccttatactcctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25952527 |
atatttttatgtgataaaattgctactctatcattttccaacactttaatttacatttcctaaccttttaattagttttatagccttatactcctt |
25952432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 559 - 811
Target Start/End: Complemental strand, 25952319 - 25952051
Alignment:
| Q |
559 |
aacatatgcttacaatgtgggatttgggcactattgacctataaccaggtgtgctatgt------tagtagataaaggatttcaaatattatactcaaca |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
25952319 |
aacatatgcttacaatgtgggatttgggcactattgacctataaccaggtgtgctatgtctacgttaatagataaaggatttcaaatattatactcaaca |
25952220 |
T |
|
| Q |
653 |
t----cagacgcacacacaagttttgatcaaactcatggaattgccttaaaaatactggtgtgacggaactcttttacgacttatttaacgaagaagcag |
748 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
25952219 |
tatatcagacgcacacacaagttttgatcaaactcatggaattgccttaaatataatggtgcgacagaactcttttacgacttatttgatgaagaagcag |
25952120 |
T |
|
| Q |
749 |
aaga------ttaataattttaattcctacaacactcatttcaatggggaaccgaagggtggttgagca |
811 |
Q |
| |
|
|||| | |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
25952119 |
aagaaacaactcaataattttaattcctacaacatttgtttcaatggggaaccgaagggtggttgagca |
25952051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 884 - 1039
Target Start/End: Complemental strand, 25951989 - 25951833
Alignment:
| Q |
884 |
aggatttcgggttggtcacccatcttgtacatactttcccc-atttttaatatgtattatgagtgggtgacaaaggatatggatttcttggagacaccaa |
982 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |
|
|
| T |
25951989 |
aggatttcggtttg-tcccccatcttgtacatactttcccccatttttaatatgtattatgagtggatgacaaaggatatgaatttcttgaagataccaa |
25951891 |
T |
|
| Q |
983 |
ccgatttgaaatatatgagtctctccttacttgttaaaccacctc-taacttataaag |
1039 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
25951890 |
ccgatttgagatatctgagtctctccttactgtttaaacccactcttaacttataaag |
25951833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University