View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702-Insertion-10 (Length: 414)
Name: NF4702-Insertion-10
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702-Insertion-10 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 325
Target Start/End: Complemental strand, 9326224 - 9325928
Alignment:
| Q |
29 |
attaaccttatgatcgtattacacgtattacacatgcagagtttattacatcctcgtgtataaagatgatttttgaattattcttctacgttttggtcta |
128 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9326224 |
attaaccttatgatcatattgcacgtattacacatgcagagtttattacatcctcgtgtataaagatgatttttgaattattcttctacgttttggtcta |
9326125 |
T |
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| Q |
129 |
ttgaatcacctgagctaacaaatataacgattgtttggtggtgatacaaaatttcagtataggaattattctaatcgtaaattgctggtagttcattttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9326124 |
ttgaatcacctgagctaacaaatataacgattgtttggtggtgatacaaaatttcagtataggaattattctaatcgtaaattgctggtagttcattttg |
9326025 |
T |
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| Q |
229 |
ttattaaacaaaagcataaatgtcaatgccatggcgcaaaagctactttttgtgactacgtagattataacaattacatgtattgtaccagtatcag |
325 |
Q |
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| T |
9326024 |
ttattaaacaaaagcataaatgtcaatgccatggcgcgaaagctactttttgtgactacatagattataacaattacatgtattgtaccagtatcag |
9325928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 9325898 - 9325839
Alignment:
| Q |
355 |
gtaattgaaggtgttggatctcagctataaccatttgaatggagaattacctggatttga |
414 |
Q |
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| T |
9325898 |
gtaattgaaggtgttggatctcagctataaccatttgaatggagaattacctggatttga |
9325839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 3144437 - 3144284
Alignment:
| Q |
133 |
atcacctgagctaacaaatataacgattgtttggtggtgat-acaaaatttcagtataggaattattctaatcgtaaattgctggtagttcattttgtta |
231 |
Q |
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|||||||||||||||| |||||| ||||||| | ||||||| | ||||| |||| |||| |||||||||||||||| ||||||| | ||| | | || |
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| T |
3144437 |
atcacctgagctaacagatataatgattgttcgatggtgattatgaaattgcagtctagggattattctaatcgtaacttgctggcaattccagtcggta |
3144338 |
T |
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| Q |
232 |
ttaaacaaaagcataaatgtcaatgccatggcgcaaaagctactttttgtgacta |
286 |
Q |
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| T |
3144337 |
ttaaacaaaagcataa-tgtcaatgccatggtgcaaaaggtactttttatgacta |
3144284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 7117995 - 7118190
Alignment:
| Q |
129 |
ttgaatcacctgagctaacaaatataacgattgtttggtggtgat-acaaaatttcagtataggaattattctaatcgta-----aattgctggtagttc |
222 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||||||| | |||||| ||| |||| |||||| |||||||| | ||||||||||||| |
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| T |
7117995 |
ttgaattatctgagctaacaaatataatgattgtttggtggtgattatgaaatttaagtttagggattattttaatcgtatcgtaacttgctggtagttc |
7118094 |
T |
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| Q |
223 |
attttgttattaa---acaaaa-gcataaatgtcaatgccatggcgcaaaagctactttttgtgactacgtagattataacaattacatgtattgta |
315 |
Q |
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| T |
7118095 |
cttttgttattaacaaacaaaaagcgtag-tgtcaatgccatggtgcaaacgctactttctgtgcctatttagcttataacaattacatgtattgta |
7118190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 11421279 - 11421334
Alignment:
| Q |
359 |
ttgaaggtgttggatctcagctataaccatttgaatggagaattacctggatttga |
414 |
Q |
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| T |
11421279 |
ttgaaggtgttggatctcagctataaccaattgaatggagaattgcctggatttga |
11421334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 9317987 - 9317866
Alignment:
| Q |
177 |
aaatttcagtataggaattattctaatcgtaaattgctggtagttcattttg-ttattaaacaaaagcataaatgtcaatgccatggcgcaaaagctact |
275 |
Q |
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| T |
9317987 |
aaatttcagtttagggattattcttatcgtaacttggtaatagttcctttttcttattaaaaaaaatcataa-tgtcgatgccatggtgtaaaagctact |
9317889 |
T |
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| Q |
276 |
ttttgtgactacgtagattataa |
298 |
Q |
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| T |
9317888 |
ttctgtgactacttagattataa |
9317866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 9318209 - 9318151
Alignment:
| Q |
104 |
aattattcttctacgttttggt-ctattgaatcacctgagctaacaaatataacgattg |
161 |
Q |
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| T |
9318209 |
aattattcttctacattttagttctattgaatcacctgagctaacaaatataatgattg |
9318151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 1315 - 1059
Alignment:
| Q |
56 |
ttacacatgcagagtttattacatcctcgtgtataaagatgatttttgaattattcttctacgttttggt-ctattgaatcacctgagctaacaaatata |
154 |
Q |
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||||| ||||||||||||||||||||||| || ||| |||||||||| |||| |||| || |||| || |||||||||||||||||||||||||| || |
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| T |
1315 |
ttacagatgcagagtttattacatcctcggatacaaatatgatttttgtattactcttttaaattttcgttctattgaatcacctgagctaacaaattta |
1216 |
T |
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| Q |
155 |
acgattgtttggtggtga-tacaaaatttcagtataggaattattctaatcgtaaattgctggtagttcattttgttattaaacaaaagcataaatgtca |
253 |
Q |
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| T |
1215 |
acgattgtttggtggtgattatgaaatttcaatttagggattattcttatcgtaatttggtgatagttc---ttgttattaaacaaaaccat-aatgtcg |
1120 |
T |
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| Q |
254 |
atgccatggcgcaaaagctactttttgtgactacgtagattataacaattacatgtattgta |
315 |
Q |
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| T |
1119 |
atgccatggtctaaaccctac-ttctgtgactacttagattataacaactatatgtattgta |
1059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 37460945 - 37460865
Alignment:
| Q |
197 |
ttctaatcgtaaattgctggtagttcattttgttattaaacaaaagcataaatgtcaatgccatggcgcaaaagctactttt |
278 |
Q |
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| T |
37460945 |
ttctaatcgtaacttgctggtagctccttttgttattaaactaaaccat-aatgtcaatgccatggtgcaaaagctcctttt |
37460865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 37461038 - 37460945
Alignment:
| Q |
129 |
ttgaatcacctgagctaacaaatataacgattgtttggtggtga-tacaaaatttcagtataggaattattctaatcgtaaattgctggtagtt |
221 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||||| || ||||||| | |||| ||||||||| ||||| || ||||||||| |
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| T |
37461038 |
ttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattctagccgtaacttactggtagtt |
37460945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 37461108 - 37461055
Alignment:
| Q |
69 |
gtttattacatcctcgtgtataaagatgatttttgaattattcttctacgtttt |
122 |
Q |
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| T |
37461108 |
gtttattacatcctcgagtataaacatgatttttttattcttcttctaggtttt |
37461055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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