View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702-Insertion-4 (Length: 720)
Name: NF4702-Insertion-4
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Original strand, 12156795 - 12157512
Alignment:
| Q |
8 |
gagtagtggttaattcctcctttaagggagaattaaatataggctcatcaaccagaacattaacgaaaatccaaaaacgatccttcagtgtgttattgtc |
107 |
Q |
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| T |
12156795 |
gagtagtggttaattcctcctttaggggagaattaaatataggctcatcaactagaacattaacgaaaattcaagaacgatcctacagtgtgttattgtc |
12156894 |
T |
|
| Q |
108 |
caaattgacgaagtccttctctttt--gctatatttgatacatgggtaataatcttatgatgtaattaacatgagtcccatcgttgattg-agcaatata |
204 |
Q |
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|||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
12156895 |
caaattgacgaagtcctttttttttttgctatatctgatacatgggtaataatcttatgatgtaattaatatgagtcccaccgttgattggagcaatata |
12156994 |
T |
|
| Q |
205 |
gttaacaaaactgacttggtcaaaaacaaattaaggcgtgtgagacaagaaatgtacatcaatgacctccaagttgctataattcaaaagctcactagct |
304 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
12156995 |
gttaacaaaactgacttggtaaaaaacaaattaaggcatgtgagacaagaaatgtacatcaatgaccttcaagttggtataattcaaaagctcactagct |
12157094 |
T |
|
| Q |
305 |
agccacctgttgaaactacctctcacttgaa---actac-atcaatgacctatcacttactttgacataaatcctaataacaacaacaacaaccaaatga |
400 |
Q |
| |
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|| || ||||||||||||||||||||||| | || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12157095 |
agtcagctgttgaaactacctctcacttggactcacgactatcttgcacctatcacttactttgacataaatcctaataacaacaacaacaaccaaataa |
12157194 |
T |
|
| Q |
401 |
tttattatataaca---gcgagaaaaacaaaccccacacacatgtacacatcacttactttggcataatcctaataacaacaacaactagatgatttgtt |
497 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12157195 |
tttgctatataacaacagcgagaaaaacaaaccccacacacatgtacacataacttactttggcataatcctaataacaacaacaaccaaatgatttgtt |
12157294 |
T |
|
| Q |
498 |
atataataacaatggaaaaacaaaccacacacacgtacgtaaattaagctcttaatcaaactatatatttatagaaatgaacgttgattgcttctgaaca |
597 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12157295 |
atctaataacaatggaaaaacaaaccacgcacacgtacgtaaattaatctcttaatcaaactatatatttatagaaatgaacattgattgcttctgaaca |
12157394 |
T |
|
| Q |
598 |
aattttaggaagagatcagcataatatgtgaacgatgtaataggaatcgtggttccattttattcaaccttaatcgtccttccgaggatccctgtcatgt |
697 |
Q |
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| T |
12157395 |
gattttaggaaaagattggcat-atatgtgaacgatgtaataggaatcttggttccatttaattcaaccttaatcgtccttccgaggatccctgtcatgt |
12157493 |
T |
|
| Q |
698 |
ccaccacacacttcttcat |
716 |
Q |
| |
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| T |
12157494 |
ccaccacacacttcttcat |
12157512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 9875262 - 9875370
Alignment:
| Q |
163 |
tgatgtaattaacatgagtcccatcgttgattg-agcaatatagttaacaaaactgacttggtcaa-aaacaaattaaggcgtgtgagacaagaaatgta |
260 |
Q |
| |
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||||||||| ||||||||||||| | ||||||| |||||| |||||||||| ||||| |||| || ||| ||||||||| |||| ||||||||||| | |
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| T |
9875262 |
tgatgtaatcaacatgagtcccacccttgattgtagcaatggagttaacaaagctgacctggtgaagaaaaaaattaaggtgtgtaagacaagaaataaa |
9875361 |
T |
|
| Q |
261 |
catcaatga |
269 |
Q |
| |
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||||||||| |
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|
| T |
9875362 |
catcaatga |
9875370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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