View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4702-Insertion-6 (Length: 487)

Name: NF4702-Insertion-6
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4702-Insertion-6
NF4702-Insertion-6
[»] chr7 (1 HSPs)
chr7 (8-487)||(240080-240558)
[»] chr6 (2 HSPs)
chr6 (449-487)||(3634204-3634242)
chr6 (447-483)||(17352556-17352592)
[»] chr8 (2 HSPs)
chr8 (450-487)||(33053643-33053680)
chr8 (451-480)||(13109637-13109666)
[»] chr4 (1 HSPs)
chr4 (450-487)||(21823394-21823431)
[»] chr2 (3 HSPs)
chr2 (451-487)||(35406132-35406168)
chr2 (454-487)||(20515848-20515881)
chr2 (454-486)||(31483245-31483277)
[»] scaffold0211 (1 HSPs)
scaffold0211 (450-487)||(24765-24802)
[»] chr3 (1 HSPs)
chr3 (451-480)||(17132472-17132501)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 240080 - 240558
Alignment:
Q  8 gttatagagacccaattggagaaaattgaacaagaaaagaagaacgaggatgatgataatgaggaaaaggataaaagtgaggaacctatcggttgtggag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240080 gttatagagacccaattggagaaaattgaacaagaaaagaagaacaaggatgatgataatgaggaaaaggataaaagtgaggaacctatcggttgtggag 240179  T
Q  108 tttaaatgnnnnnnnnnnagttaattatgttgttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgtagttacatgc 207  Q
    ||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  240180 tttaaatgttttttttt-agttaattatgttgttgtttcgtgagcactactatggccacgatatcttctactttaatttcatttagttgtagctacatgc 240278  T
Q  208 atgcatgtgctagtgattatgtctttaagctttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240279 atgcatgtgctagtgattatgtctttaagctttcaccatttatcaatcttgcattgtaaatcttgccatccatgaattaatgatgtttcaccctttcttt 240378  T
Q  308 tcaattcataacataaattaatagaatagttagattttcctttttatgttacttaggctgatnnnnnnnnctaattaatgatacacaccatcttcctcac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  240379 tcaattcataacataaattaatagaatagttagattttcctttttatgttacttaggctgataaaaaaaactaattaatgatacacaccatcttcctcac 240478  T
Q  408 tttcttaatgcctcagagtgatttctcttgaatctaccaaatatttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  240479 tttcttaatgcctcagagtgatttctcttgaatttaccaaatatttaaaactagtcttattgtttaccaaaaataccggt 240558  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 3634242 - 3634204
Alignment:
Q  449 tatttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  3634242 tatttaaaactagtcttattgtttaccaaaaacaccggt 3634204  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 17352592 - 17352556
Alignment:
Q  447 aatatttaaaactagtcttattgtttaccaaaaatac 483  Q
    |||| |||||||||||| |||||||||||||||||||    
T  17352592 aataattaaaactagtcctattgtttaccaaaaatac 17352556  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 33053680 - 33053643
Alignment:
Q  450 atttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33053680 atttaaaactagtcttattgtttaccaaaaacaccggt 33053643  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 13109666 - 13109637
Alignment:
Q  451 tttaaaactagtcttattgtttaccaaaaa 480  Q
    ||||||||||||||||||||||||||||||    
T  13109666 tttaaaactagtcttattgtttaccaaaaa 13109637  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 21823431 - 21823394
Alignment:
Q  450 atttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  21823431 atttaaaactagtcttattgtttaccaaaaacaccggt 21823394  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 35406132 - 35406168
Alignment:
Q  451 tttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35406132 tttaaaactagtcttattgtttaccaaaaaaaccggt 35406168  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 20515848 - 20515881
Alignment:
Q  454 aaaactagtcttattgtttaccaaaaataccggt 487  Q
    ||||||||||||||||||||||||||| ||||||    
T  20515848 aaaactagtcttattgtttaccaaaaacaccggt 20515881  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 31483277 - 31483245
Alignment:
Q  454 aaaactagtcttattgtttaccaaaaataccgg 486  Q
    |||||||||||| ||||||||||||||||||||    
T  31483277 aaaactagtcttcttgtttaccaaaaataccgg 31483245  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 24802 - 24765
Alignment:
Q  450 atttaaaactagtcttattgtttaccaaaaataccggt 487  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  24802 atttaaaactagtcttattgtttatcaaaaatatcggt 24765  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 17132501 - 17132472
Alignment:
Q  451 tttaaaactagtcttattgtttaccaaaaa 480  Q
    ||||||||||||||||||||||||||||||    
T  17132501 tttaaaactagtcttattgtttaccaaaaa 17132472  T

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