View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702-Insertion-7 (Length: 408)
Name: NF4702-Insertion-7
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 3521194 - 3520794
Alignment:
| Q |
8 |
ttcaccactcaccgttcttgtcaccggcgcttctggtttcgtcggtatgcatgtctcgctcgctcttaagcgacgtggcgatggggttttagggattgat |
107 |
Q |
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| T |
3521194 |
ttcaccactcaccgttcttgtcaccggcgcttctggtttcgtcggtatgcatgtctcgctcgctcttaagcgacgtggcgatggggttttagggattgat |
3521095 |
T |
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| Q |
108 |
aatttcaatcggtattatgatattaacctcaaacgcactcgtgccaaggttctttcacgcgctggtgtttttgtcgttgaaggtgatatcaatgatgttc |
207 |
Q |
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| T |
3521094 |
aatttcaatcggtattatgatattaacctcaaacgcactcgtgccaaggttctttcacgcgctggtgtttttgtcgttgaaggtgatatcaatgatgttc |
3520995 |
T |
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| Q |
208 |
atcttcttcgtaaactgtttgatgttgttgcttttactcatgttatgcatcttgctgctcaagctggggttcgttatgctatgcgaaaccctaattcgta |
307 |
Q |
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| T |
3520994 |
atcttctccgtaaactgtttgatgttgttgcttttacgcatgttatgcatcttgctgctcaagctggggttcgttatgctatgcgaaaccctaattcgta |
3520895 |
T |
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| Q |
308 |
tgttcacagcaacattgcaggtttgaatacatatatagtttaagaattattcattcattatagttatatagtttatggaataaactgtagagtgcgtgcg |
407 |
Q |
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| T |
3520894 |
tgttcacagcaacattgcaggtttgaatacatatatagtttaagaattattcattcattatagttatatagtttatggaataaactgtcgagtgcgtgcg |
3520795 |
T |
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| Q |
408 |
a |
408 |
Q |
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| T |
3520794 |
a |
3520794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 320
Target Start/End: Complemental strand, 42373731 - 42373451
Alignment:
| Q |
40 |
ctggtttcgtcggtatgcatgtctcgctcgctcttaagcgacgtggcgatggggttttagggattgataatttcaatcggtattatgatattaacctcaa |
139 |
Q |
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| T |
42373731 |
ctggtttcgtcggaagtcatgtcgcactcgctttaaaacgccgcggcgacggtgttcttgggattgataatttcaatcggtactatgatgttaacctaaa |
42373632 |
T |
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| Q |
140 |
acgcactcgtgccaaggttctttcacgcgctggtgtttttgtcgttgaaggtgatatcaatgatgttcatcttcttcgtaaactgtttgatgttgttgct |
239 |
Q |
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| T |
42373631 |
acacgcccgtcagaagcttctagaacgcgccggaattttcgtcgtggaaggtgatatcaacgacggtacgcttctcaagaagcttttcgatgtggttccg |
42373532 |
T |
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| Q |
240 |
tttactcatgttatgcatcttgctgctcaagctggggttcgttatgctatgcgaaaccctaattcgtatgttcacagcaac |
320 |
Q |
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| T |
42373531 |
tttactcacgtgatgcatctcgcggcacaagctggtgttcgctatgctatgcaaaaccctaactcatacgttcacagcaac |
42373451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 42179397 - 42179349
Alignment:
| Q |
252 |
atgcatcttgctgctcaagctggggttcgttatgctatgcgaaacccta |
300 |
Q |
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| T |
42179397 |
atgcatcttgcggcacaagctggtgttcgttatgctatgcaaaacccta |
42179349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 8316142 - 8316036
Alignment:
| Q |
225 |
tttgatgttgttgcttttactcatgttatgcatcttgctgctcaagctggggttcgttatgctatgcgaaaccctaattcgtatgttcacagcaacattg |
324 |
Q |
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| T |
8316142 |
tttgaggttgttccttttactcatgtcatgcatttggctgctcaagctggtgtgaggtatgctatggagaatcctggttcttatgttcatagtaacattg |
8316043 |
T |
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| Q |
325 |
caggttt |
331 |
Q |
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| T |
8316042 |
ctggttt |
8316036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 54114354 - 54114400
Alignment:
| Q |
228 |
gatgttgttgcttttactcatgttatgcatcttgctgctcaagctgg |
274 |
Q |
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| T |
54114354 |
gatgttgtggcttttactcatgtgatgcatctcgcagctcaagctgg |
54114400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 8316348 - 8316251
Alignment:
| Q |
19 |
ccgttcttgtcaccggcgcttctggtttcgtcggtatgcatgtctcgctcgctcttaagcgacgtggcgatggggttttagggattgataatttcaat |
116 |
Q |
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| T |
8316348 |
ccgttcttgtgaccggagctgctggtttcgtcggaacacatgtctccgcggcgcttaagcgtcgcggagatggtgttcttgggattgataatttcaat |
8316251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 37995596 - 37995559
Alignment:
| Q |
16 |
tcaccgttcttgtcaccggcgcttctggtttcgtcggt |
53 |
Q |
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| T |
37995596 |
tcaccgttcttgtcaccggcgcagctggtttcgtcggt |
37995559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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