View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_high_1 (Length: 602)
Name: NF4702_high_1
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 602
Target Start/End: Complemental strand, 51406304 - 51405723
Alignment:
| Q |
19 |
agacatgtgtttgcatgcacttaatggatatgagttcagttgtcaaaatacaaagagtcaacacatcaacctaaatgctagaggttttcaatggatttaa |
118 |
Q |
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| T |
51406304 |
agacatgtgtttgcatgcacttaatggatatgagttcagttgtcaaaatacaaagagtcaacacatcaacctatatgctagaggttttcaatggatttaa |
51406205 |
T |
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| Q |
119 |
atttcctcattttctccatgtgaaatgataacaacaatctctttctctttttgacattttcttcaactctaaagtgttgactctacaataatttcaaata |
218 |
Q |
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| T |
51406204 |
atttcctcattttctccatgtgaaatgataacaacaatctctttctctttttgacattttcttcaactctaaagtggagactctacaataatttcaaata |
51406105 |
T |
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| Q |
219 |
ataataaaagagtgagtgttagagaaaatgttcatatctctttacttttacgagtgaaatatgcaagaacaggtttgggcaccaaaataaaatagtaaaa |
318 |
Q |
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| T |
51406104 |
ataataaaagagtgagtgttagagaaaatgttcatatctctttacttttacgagtgaaatatgcaagaacaagtttgggcaccaaaataaaatagtaaaa |
51406005 |
T |
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| Q |
319 |
catgaattttgtaaacaatgatatataaaattcaaaccatacattgtctggggtacaataatgcgatataaatatccaacaactttaaaatgtcacggat |
418 |
Q |
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| T |
51406004 |
catgaattttgtaaacaatgatatataaaattcaaaccatacattgtct-gggtacaataatgcgatataaatatccaacaactttaaaatgtcacggat |
51405906 |
T |
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| Q |
419 |
atagactaataaagtgtctaattccgccagtatagtatagtcttgctctgaaagcttccaaagtcaccttcatttcatttatatatacataaagtacata |
518 |
Q |
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| T |
51405905 |
atagactaataaagtgtctaattccgccagtatagtatagtcttgctctgaaagcttccaaagtcaccttcatttcatttatatatacataaagtacata |
51405806 |
T |
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| Q |
519 |
taaaccatataaataaccaccatcattcctttgatgacatgcacattaattaaattcactaacgtgttggtgtgtctggcactt |
602 |
Q |
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| T |
51405805 |
taaaccatataaataaccaccatcattcctttgatgacatgcacattaatt-aattcactaacgtgttggtgtgtctggcactt |
51405723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 13070070 - 13070101
Alignment:
| Q |
221 |
aataaaagagtgagtgttagagaaaatgttca |
252 |
Q |
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| T |
13070070 |
aataaaagagtgagtgttagagaaaatgttca |
13070101 |
T |
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