View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4702_high_15 (Length: 240)
Name: NF4702_high_15
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 14771643 - 14771841
Alignment:
| Q |
13 |
ccaatctcaatcatcaatcacaacataattcttaattattttttcctctataatgagaatcggcagcaatccaatccaatttttcacgatactgctatgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14771643 |
ccaatctcaatcatcaatcacaacataattcttaattattttttcctctataatgagaatcggcagcaatccaatccaatttttcacgatactgctatgg |
14771742 |
T |
|
| Q |
113 |
ggatttgtgctaaactctagaatagatggcgtnnnnnnnngcctttattgttaaaagagaatgtagcttagccaaaagcaggctgcatccattctttctg |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14771743 |
gggtttgtgctaaactctagaatagatggcgt-aaaaaaagcctttattgttaaaagagaatgtagcttagccaaaagcaggctgcatccattctttctg |
14771841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University