View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_10 (Length: 284)
Name: NF4702_low_10
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 14771244 - 14771523
Alignment:
| Q |
13 |
gttgctgtttcattcattaattggagagaaatagacgcactaaactaataactcaattgtgttgaaattgca-----agtaagatatttcaactacttca |
107 |
Q |
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| T |
14771244 |
gttgctgtttcattcattaattgtagagaaaaagacgcactaaactaataactcaattgtgttgaaattgcaggtcaagtaagatatttcaactacttca |
14771343 |
T |
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| Q |
108 |
caaagaaaggatcaaagaaaagctacaaagaagaattaatattgttgactggagtcacagttttatttgttcattatgtgaattttatagttgttctttt |
207 |
Q |
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| T |
14771344 |
caaagaaaggttcaaagaaaagctacaaagaagaattaatattgttgactggagtcacagttttatttgctcattatctgaattttatagttgttctttt |
14771443 |
T |
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| Q |
208 |
ttatgagagcaagaccgtttatgattataa---ttannnnnnnnnnatgtgaagaaggatcatttatgacattttatatt |
284 |
Q |
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| T |
14771444 |
ttatgagagcaagacagtttatgattataatatttttattttttttatgtgaagaaggatcatttatgacattttatatt |
14771523 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 47648614 - 47648566
Alignment:
| Q |
95 |
ttcaactacttcacaaagaaaggatcaaagaaaagctacaaagaagaat |
143 |
Q |
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| T |
47648614 |
ttcaactgcttcacaaagaaagattcaaacaaaagctacaaaaaagaat |
47648566 |
T |
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